result

Gene information

Detail information of AfisC1G06242

Location

Gene	Chr	Start	End	Strand
AfisC1G06242	chr1	1133044596	1133045801	+

Sequences

CDS

Protein

Gene

>AfisC1G06242
ATGAATATCTATGGAAATTGGGGCCTCCCTGTCAACTACTGCTATCTCTCAGGTAAAATCCAATGACCATATTAAACCGTGCAAGTTGAATAGTATAAGCAAATAACAAATTATCTACTTTCTAGCTATCAGTTAATTAAAATTTACAGTATTGGTTACTCCTCCAAACTAGAATAATACAAGTTTGGGAAATACTTCCACTAATAGCAGTCAGACTACTCCAATTAATGCAGAGTATAAAGGAAAAATAGTACTCAAGTCATGGGACAAAATTTAGGTTTTAAACTCTCTGAACATCCAATATTTTTGTATCTAACTACATTATTTTTGTTTAGTAGGACTTAGAGCCGAGTACAACCACTGAAAAAATTAAGGCTCGTATCTAACTCACCACAACATTGCACATATCATCCACCAATGCAACCATTTCCACTGCCTTTCCCCACCAAACAACCACCGGCTATATAATCAACCCACAAAACACAATGCACATATACATAATAGCCCTCTGTTTTCACTTCAACCACCCATATTGTTGCAGCTCTGATCTCAACACACCCCTCTACCATTGTTGCCTTACCACCATCTTCTGACTTCTGCCTTCAACATTCCTCCCTTACCTCATTCCTGACAACAAAAGGTGGCATTTCTCTTCGTATATATATCAGACTCGCTCTTCTACTATAATTCATTTCTTAGTTGTTACAAAAATCAAAATAAAATGGTTCTAGAAACAGGGCAGGCGTTCTTAAACAGCGCCCAAAGAGAGAGCAAAGCCGACCCAGTTCCATCCGGCCTGACACAAGAGCAAGAACACTCGATCATAGATTCATAGTATCCACACTGTTGCATGTCATATGCAGCACCGAATCAGAAGCATCTGCTTCCACAAGCGCCATATTCACAAACTATCCACGGAAGGAAATATGCAGCCGATGTGGGATCGAGGGATGCATTGGATGCGATCTATTTACAAAAAGTAACACGTCAACATCAGATCAGAGCAAGCAAAATGTGCAGCAGCAGCAGCCGAGAAAGAGAAGAAATAAGACGAACAAGTACAGAGGAGTAAGGCAGAGGCCGTGGGGTAAATGGGCAGCAGAGATAAGGGACCCAAGAAAAGCAGTAAGAAAGTGGCTGGGAACGTTTAAAATGGCAGAGGATGCAGCCAGAGCAAACGACCGTAACATCTATTCACTAAATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	KMZ59480.1	8.1e-18	hypothetical protein ZOSMA_68G00670
Swissprot	Q9SZ06.1	9.0e-14	Ethylene-responsive transcription factor ERF109
trEMBL	A0A0K9NU47	5.8e-18	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G67000.1	38.71	1e-18	89.4		Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06242	AT5G67000.1	124	56	2	41	162	54	159	38.71	1e-18	89.4
AfisC1G06242	AT3G16770.1	72	33	0	93	164	48	119	54.17	2e-17	85.5
AfisC1G06242	AT5G61890.1	121	47	2	44	164	32	130	42.98	2e-17	85.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	123	164	37.0	2.7e-09

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009749	P	response to glucose
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0010186	P	positive regulation of cellular defense response
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0043565	F	sequence-specific DNA binding
GO:0048316	P	seed development
GO:0051301	P	cell division
GO:0070483	P	detection of hypoxia
GO:0071456	P	cellular response to hypoxia
GO:0071497	P	cellular response to freezing
GO:0090332	P	stomatal closure

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network