result

Gene information

Detail information of AfisC1G06280

Location

Gene	Chr	Start	End	Strand
AfisC1G06280	chr1	1139071052	1139073097	+

Sequences

CDS

Protein

Gene

>AfisC1G06280
ATGAAGTTTCCAAAGTTGATAAAGCCGAGATCTGATGATGGACGGAAGCTTGCGATTCATGAAATTGATGATTACAATGATGAAATCCTGGCTGCGAACTGCTTATCTGAGTTGGTGGTTGAGGTTAGTGAATCTGAAGGTACTTCCTTGGTTATAGTTGTTGATAACTTTTTAGATTCCTAAGAAATCATGATTGATTTTCAAATCTTTTTTTGAATTTTGAATTTTATCTTGCTGCCTGCTTGTTTTTTCGGTGATGATATTGCTAGATTGTTGTGCTAAAGCTTTGCCATAAATGTTGATAGTTCAATATTGTTGATCGAAAGTAGATAAAACCAAGGTCATGATCACAACTGATGTGCTTGCTGTTTAGCGTTTCAAAAGATGGTGGACTAAGATGCTAATTTTGAACTAATGGATATGATAGCGATAGTGGTTTTACAACTTTTACATCTTCATATTATCTCAAAGAAAATTGCTTCATAAAATAATTCCTTGTGTTTATATACATATGAAATTGGTGGAAATAAGAATGAGAAATGAAGACAATGTAATTTTGGGTTTGTTAAGATATTGATTATGGAGATGGAATTGAGTGACGGAGAAATATGTAGTGTTTAGTTATGAATTCAAGGTATTCCAAATTCTAAGCATACAAGTTCAATGTTCATATTGTACGCAAGCATATTACCAACATGCAAGATGGAACAACTATGTATTGTCAAAAGTTTCATTATCTAGTATTTGGCAATAAATAAAGTATTCATAAAACATTCATATAGATAAAAGTAAAAGAAATTTCCAAAAGTCTGCAATACAAAAAGTAATGCCACCTGTTACTTTACCAATTAGATTACAACCAATCAAATCAGATAGTGCAATGCGTGCAATTTAGAGAGGCTTCTTTAGGATTTTAATTCACGATTGATATAATAATAGAGAAGGATTCTTGAATCTTGCATATTATTCAGATGACAAAGATTTAATCTGAAGCTTATCTTAGCATGTTATATTATACAATCCGAGACAATGAAATCCAGTCAAAAGATTACTGAAAATATATATACATGTACTTTGAGACTACAACCTAAATAAAATGGAAAAACAAACACCCAAATAGATCGACACCTTTTTGTATGATTTGTCAAACTGAAAAAAGAAGAAAAAGATTCAGCAACAACAGAACAACATCTAATCCAGACCCTTTTGAAATTCTGCTTAGATTTGGGACAACCAGATCGTCCCCACCACCAATAGATGTAAATGTTGTCCACCAACACATAATATAATGACGAATTAGTAATGTTAACATATGTGATGACAAAAAGTAAAATTTCAAGTATTTTCATGAATAAGCATACGCACAGTAAAATAAGATGATTTATTTCTGTTTTGTATATTACTGTGATCGCTTCGTTTTCAGTGACAATGAAAAGTTGAAAAAAGAACCAGAAAAGTATCCAAAACATGCAGAAAAATCTAGTTAGGTATATGCACTTCATAGTGCATTCAAAAAATATGCCTATGGCATGTGGATAAAGGTTTGGGATTTATTTGTTTTTACATCAGTGTCAGTTGCTCAAGAGTTCGGAAATTTACATAGTTACTGCGCAGGTAAATTTACAAAAGTTCAAAAAATTTACATAGTTACCGAGTAGTTAAAATAAATGCATTACTAAATACATCTAAAAATATACATAGTTAAATCAAAGTATCTAGCTATATGCAAAGTCAAATAGTTAAATAGAGTTGTGACTTTTTGCTGATAATTGGATAGCAAATGGATCATTGGATAAGCATCTCTTTGCTGATGATGGTAACAACTATAGTTGCCAAAGCAAGACTAATAGATTGCTGTCATGGAAAGCAAGATACAGAATAGCAGTTGGAGTTGCAAAGGCATTGACATACCTTCATCATGAGTGCCTTGAGTGGATTGTGCATTGTGATGTGAAGCCTGAAAACATACTTTTGGATACTGAGTTTGAGCTAAAAATAACTGATTTTGGGTTGGTGAAGTTGTGGAAGAGAGGTGGAGTTGGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008778293.1	2.2e-26	LOW QUALITY PROTEIN: putative receptor protein kinase ZmPK1
Swissprot	P17801.2	1.8e-25	Putative receptor protein kinase ZmPK1
trEMBL	Q01KM2	2.1e-26	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G19130.1	52.38	2e-20	94.7		S-locus lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06280	AT2G19130.1	84	33	1	48	131	570	646	52.38	2e-20	94.7
AfisC1G06280	AT1G34300.1	87	34	1	42	128	555	632	50.57	3e-20	94.0
AfisC1G06280	AT4G00340.1	77	37	1	56	131	557	633	50.65	1e-18	89.0

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	70	132	57.9	9.1e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0002229	P	defense response to oomycetes
GO:0042742	P	defense response to bacterium
GO:0004672	F	protein kinase activity
GO:0006968	P	cellular defense response
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009845	P	seed germination
GO:0010726	P	positive regulation of hydrogen peroxide metabolic process
GO:0010942	P	positive regulation of cell death
GO:0031625	F	ubiquitin protein ligase binding
GO:0046777	P	protein autophosphorylation
GO:0052033	P	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network