result

Gene information

Detail information of AfisC1G06286

Location

Gene	Chr	Start	End	Strand
AfisC1G06286	chr1	1140026511	1140027825	+

Sequences

CDS

Protein

Gene

>AfisC1G06286
GTTCTGTAAACACCCTCATAAACACTAAGCTTGCAAACTCAACTTAAACACAACAGCATCAGATACTTGCAAATTATCATCATCAATGGGGAGGTCACCATGTTGTGATAGAGAAGCAAATGTGAAAAAAGGACCATGGACTACTGAAGAAGATACAAAACTTATGGAGTATATACAGAAGCATGGTTGTGGCAATTGGCGCAATTTGCCAAAAAATGCTGGGCTTAATCGATGCGGGAAAAGCTGCAGACTTCGATGGACTAACTACCTTCGACCTGATATAAAACGAGGAAGGTTTACTGAAGACGAAGAGCAACTTATCATTCAGCTTCATTCAGTCCTTGGAAATAAGTAAGTAATTTTCAATCACTCAACAATTCTTTAACTTTTATGTAGCAAATGAATAAAACTAACATATTTGTATTTATATATAGGTGGTCAATGATAGCTGCAAGATTACCAGGGAGAACAGATAATGAAATAAAGAACTACTGGAACACGCACCTGAGAAAGAAGCTGCTAATAATGGGTATCGATCCAGTAACGCACAGGCCAAGATCAGATCACCTTAATCTACTCTCAGACCTGCAAAACTACACAAATTTGGCAACGAATCCATTAATCAACAACGCCATTCAGCTTCAGAAGTTACAGCTTTTTCAAACTCTGATCCAAGTTATTGCAAACAATTCTGCAAATGCTAAAAGTCTCATGACATCAAATAATATGTTTTCAAATGTCGCAAATGATTTTGTTCCATCGATGAATTATGGGGATCACACATTGGACTTTGACTCGGTGCCGTCTATGACTGCAGAAGTATCAGAGAATGGTCTGATTGATCAAGTGCAATTAGATGCATTCAATTTGAGTGCAAGTAGTTCACCAAATTCAGCACCTTTAGAGATTAATGGTGGATTAACTCTAGATGATGTTGACATAGATGATTTTGGATGGAAAGATATTTTAGAGTAAGCAATCTTTTTTTAATTTTACTGATTTTTCCCACTATTTTCTAATGAGATATGATGTTAATTTGTACGTATGTTCGTTGATTTTGCAGTCATATATCTTGGTCAGGGTGATGGGTTTACGCTTTGGTGAAGGAGGACACGTCTGTTGATATTTTCACCCATAGAAGAGTTGAATTTATTTTTTATTTTTACTTGCATTTTATGCATAGGTCTTTGAGATATGTAGCAGGATAAAGAATTCTTTTTGAGTACAGAATACAGAGGCTATGTATCAGTTTGTGGATAATAAAATACTTCGCATTCAAAGTGTTGTATTTCATTTGATTATTTCATATTGTAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020240778.1	3.1e-80	transcription factor MYB39-like
Swissprot	Q9M0Y5.1	9.8e-63	Myb-related protein 74
trEMBL	A0A816HXV7	8.9e-69	(rape) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16770.1	65.02	1e-70	263	AtMYB9;MYB9	myb domain protein 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06286	AT5G16770.2	203	62	3	1	195	1	202	65.02	1e-70	263
AfisC1G06286	AT5G16770.1	203	62	3	1	195	1	202	65.02	1e-70	263
AfisC1G06286	AT3G02940.1	198	64	3	1	188	1	197	62.12	3e-66	248

Ortholog group

Species	Genes
Allium cepa	g315965.t1
Allium fistulosum	AfisC1G06286
Allium sativum	Asa0G03699.1
Arabidopsis thaliana	AT3G02940.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	15	62	61.3	6.4e-17
PF00249.28	Myb_DNA-binding	Domain	68	113	58.6	4.5e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048658	P	anther wall tapetum development
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network