result

Gene information

Detail information of AfisC1G06297

Location

Gene	Chr	Start	End	Strand
AfisC1G06297	chr1	1141115241	1141119228	-

Sequences

CDS

Protein

Gene

>AfisC1G06297
TGGCTAACCATCTCTTGTTTCCTCAATTTTTTTTCTTCCCTTCTCCTTTAATTGTTTGCTTCCAATCTAATCCAAAAAAATACTCATCTGACAAAAACACTAACATGTTACCAAAAGTATACATAAAACTAGGATACAAAAACAACTACAACGGTTTTTGTTAGTACAAAGCCTACTTCTTTCTACCTATTCCTCTCTTGCCTTTTTCTTTAAGTTCTTTGTTAGCTTCTTCAAGAAATTAACTTGGTGGGGTTATTTCATAAGGATTCGTTAACTCATTAGTAACTTAAAAAAAAATGGTTAGAGGGAAAACAGAAGTAAAAAGAATAGAGAATGATACTAGTCGGCAAGTTACTTTTTCAAAGAGAAGAAATGGATTGTTGAAGAAAGCATTTGAGCTTTCTATTCTTTGTGATGCTGAGGTTGCTCTTATTGTTTTTTCTCCTAGAGGCAAACTTTATGAATTTTCTAGTTCCAGGTACTTTTATGCTTAGATCTTCTATTTTGGTAACTTGATTTGCATATGTATGTGTCTTAATTCTGAGCTCATGATGATTTTCCAATTAATTCCTTTAATAAGGTTTGATTTGATGCCTTATTTTATGATAGTATATCTGTTTGCTATGTGAATCTTGTAGATTCATCTACTTTTCTAAATCTTTCATAGTTCTATAGTTCTTTCTGCTGTTTTATTTGATTTATATTTTTATTTTATCCCTGAAATTGATTATAGATTATTATACCTTTGGGAGACTGACGTATGTAAATTTAGAAGAGAAGTTTTATTTGGGTTGACAAATTTAATTGGTTTTAATCTAATCTTTTTTTGAGTTTTAACTATCATATATAAATTGTTCGTTATTGATATCCTGATGTACTTAAACAGTTAAAACTTTATTAGAAGAACACAGCTACCTATTACCTCAGGATTTCATGTGTGATAAAATTAAAATACGGCAGCAGTAAAATGGCAAACGCATGTTATTCTCTTACCAAATTTCTACATATTAAAACTCAAAATAGAAGAAAAAAAAAGGGTTCGTTTACAAGTAAAGCTTGATTATAAAACAATGTTTATATATAAGTGAGTGATTATGTAGTTTATATATATTTCATGGGAGTTGTACCCTTCAAGGAATATAATGTAATCAAATGCTATTTTGCGCAGCTGATCATTACTAATCAAGAATTATTTTAATTTTTCTGTTTCTTGCTGTGGCTACTGTAGCATGCAAAAGACTATCGACAGATATAACAAGGCACAAAAGAAGGATGTTAGTTCTAAGGAAGCACAAGAAAACAATATGCAGGTTGTTTGAAACTCCATTTTTTACTTTCTAATTTAAGCCTTTAGTTCATTTTCCATCGAATTACTTATCTGTTCACCAATGAATTCAACTTATTTGTCATAGGTACGATGCAGTTGAGCTAATTAAAATTACATTTACTTGTTTATTCTTAGAGAAAAAGGAAAAGAAAGAAAGGAAGGAAAAGAAAGGAAGGAAAAGGAAAAGGAAAAGGAAACTTATATATTATTCTTCGTTAAAAATTGGTTACTATAAAAATGTACATATTATAACTTGTCAGTATAACCTGGAGATCTAAGTTATCAGTAGCTATATGTTATAATAAAAAGTGTTAACTTAATTACACTATCACATTTTACACAATGCTAGAAGATAAATATTGTGATACAAAGAATATGCAATAAATTTAAGTAAATCCAATTAATCAGAACAAACAAATCCATAATCTGATGGTTCAAATCATTGGATGAATCCCTGCTTTGTTTAATTGTTAAAAATATAAATTTTTCTGCATCACTTGGAGCATTTCAGATATTGATGGGTTTAATTTGTTTCAGCAATTGAAGAATGAAACTGCGGACATGACAAAGAAAATTGAACTTGCTGAATCCCATAAAAGGTACGTGCTAGCATGCACTTTTTTTTATATATAATTCCATTTTTACAAGTAAACTCGGAGTGTAATGAGCAATACATCCTCAACATTGTTAATATGTCAGACTCTAGGTCATGGATTCTAATTTGTAAATATAAATAAGCTTGTAACATAAAACACAAATTTTAACAAATTAATTAAAGCTTTTTAGTTATATTAAAATCCTAATATATTTTCTTGATCTGTATTTTTTCTCTTTCATGATCTAACCATTATTACTGAATTTATAATAACAAGCGTGGTTGTTTTGATGGTTCTGTTACACTTTAAAAAGACCAATGTAGACGAGCTTGTCCATCCAATTTTATGCCCTTAACTTGTTATCTCTGATAGTTTTGTCTATCTTTTCTAATATAGTGCCTGGTCCTTTATTTTTTTTCTTAAAGTTATGCCAAAGCTATCAATTAATTGTGAGAAACTATGCACTCTCAAAATAGCAAAAACACACAAGCGCACGTCCACACACACTCTTTCTTTTATCCTGGCATTTTTTTATGTTAGAATCATACATGTTCATACAATTAATTCCTCATGGAATTATAAAAATACACAAGTAAACAACATTTATATATTTGAGGTTATAGGTGCATGTTGTACATAATCTTTACATGAAAAATGTCCCATACATTAATGTATATTCATATTTAACATGTGCTAATATAAGCACATTAATTTATAGTCATATGCTAATTAAGATTACTGATATTTTTAGCACAAACTATCTCTATGATCTAATTATCGATTATGGTAATTTATTCAGGAAACTCCTGGGTGAAAATTTAGAATCCTGCTCTCTTCAAGAACTGCAAGAACTTGAATGCCAACTTGAGACAAGTCTTGGGAAAATAAGAGGAAGAAAGGTAACATAATCTAGCCAGAACTTAAGATATTGATAGTTTCCTAAATTAATATCAATATCTTGCTTCATATCATTATATCATGATCATTTACTTATGTTTACTGCTTTATTCACGTACCACTAATCAACTGTACTGATAAAATGTCTATTTTTTGTTAGACTTATATGCTTGTTGAAGAAATTGAAAAATTGCAAGCACAGGTTATTTTCTTTACTTTCCCTTTATATTTGCTCTAACTCATCAACATTTTGCTTAATTAGTAATTAATTTGGTAAATGAGATCAGGAGATTGTCCTTACTCAGGAGAACGCTTCGTTACATGCAAAGGTATGTACTGTACACTAATATAACTCATTTCAATTTAATGTGGATTTTATTTAAAGCACACACATGCTTTGGATGCTTCTCACTGAGTTATTAGTTTGAGGTTCCAACTCGTGATATATATTCACACATAGGGGAAGGATCAGCAGTCCCCACCATTCTGTTTAAAATGTTAGATCTTTAATTTCAGCTATTCGTTCCAATTTAAATAATAATACATTTTCTTTTATCACACCATTCAATTATTTAAATCGGAACGAATACCTGAATCTAAAGAGCTACGTTGGGGAATGAATAGACGAGGCAGCCGATCCTTTCCGACCTAGGATCAATTGTTTCTGATATCAGGAGGATATAAAAATGATGCTAAATAAAGCGGGCATTGATACATCATGTACATGTGTGTGTGACATGTTTAATTTGCATGTAAGATGATAGCTAATTATATATGATATATTTTTGATTGAATATACAGCGCAAGGTGGATACTCGACTTCAATTGATAAATTCATCAGCAAGTGAAGGTGTAAATAGCGAGTCTACTACAAGCGATGAGAACACAGGGGTGGAAACTGGATTGTATATAGGAAGGCCAGGAACAAGAAGATCTGATTAACCTGAAGAGATAAAAACTCATGCTTCTGTGTAACAATAAATATTTGTTCCGAAACAAATTTAAGAGTTGATGTTATGTATATAGTAGGAAGCGTTTATGAGTTCTTTATGCGTAACTGATCCACCTATATTCCTGCTGTTAAAAAATAAACAAAGGCAGAGAAAAGTAAAACATGATTTTACTTGCATGACATGTCAAGTTCTTTTACAATGAGAGGTACATTGTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020277367.1	4.7e-63	MADS-box protein SOC1-like
Swissprot	O82743.1	9.5e-53	Agamous-like MADS-box protein AGL19
trEMBL	A0A6I9S026	2.9e-54	MADS-box transcription factor 50 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62165.1	54.76	3e-58	221	AGL42;FYF	AGAMOUS-like 42

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06297	AT5G62165.3	210	91	1	1	210	1	206	54.76	3e-58	221
AfisC1G06297	AT5G62165.2	210	91	1	1	210	1	206	54.76	3e-58	221
AfisC1G06297	AT5G62165.1	210	91	1	1	210	1	206	54.76	3e-58	221

Ortholog group

Species	Genes
Allium cepa	g173561.t1; g534887.t1
Allium fistulosum	AfisC1G06297
Allium sativum	Asa7G03185.1
Arabidopsis thaliana	AT4G11880.1; AT4G22950.1; AT5G62165.1; AT5G62165.2; AT5G62165.3
Oryza sativa	LOC_Os10g39130.1; LOC_Os10g39130.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	57	95.0	1.2e-27
PF01486.14	K-box	Family	82	170	79.0	2.1e-22

Gene Ontology

Accession	Ontology	Name
GO:0000060	P	protein import into nucleus, translocation
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0008134	F	transcription factor binding
GO:0009739	P	response to gibberellin
GO:0009838	P	abscission
GO:0009911	P	positive regulation of flower development
GO:0010048	P	vernalization response
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010150	P	leaf senescence
GO:0010214	P	seed coat development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0044763	P	single-organism cellular process
GO:0048481	P	plant ovule development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0080155	P	regulation of double fertilization forming a zygote and endosperm
GO:0080187	P	floral organ senescence
GO:1903338	P	regulation of cell wall organization or biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network