result

Gene information

Detail information of AfisC1G06305

Location

Gene	Chr	Start	End	Strand
AfisC1G06305	chr1	1142691320	1142696896	-

Sequences

CDS

>AfisC1G06305
ATGAAAAGACCACAACTCGAAATCATCTTCATCCTCCTCCCATTTCTGCTTCCACTTTCTCTATCCTACGACAATTTCAACCCAGAAGACAATTACCTCTTAACGTTCACTCCCGCCTCCTCCTCCCTCTCTACAAACTCCACCCACCTCATCTCACCCACTTCTCCACCCCACATCACCAATAACCCTATCTCCTTCTCGTTCCCTATCTATTTCCCCGGTCCCCACGTACTCCGCCTCCACGTCCTCCCCCTACACCCGCCCACTCGATCCCTCTTCAGCCTCCTCCTCAATAATTTCACCCTCCTAACCCAATTTTCCCCATCCCTCACCGATCCGACAATCGAAGAGTTCTTTTTGGATCTCGAATCGACCCTCACGATAACGCTCGTTCCTTTACGTAAGGAAGCTGCGTATGTGAATGCGGTGGAGCTGTACTCCGTGCCCGAGGAGTTGAATCTTTTGTTGAAGGGACGTGCGCTAGAGGTGGAGCACAGGGTCAATGTTGGAGGCCCGGTCGTGACGGCGGAGAATGACACGCTGTGGAGGAGATGGGTCCCAGACGATGGGTTTTTGGTGGGGGAAAGGAGAGGGGATGAGGTGAGGTTCCAGGGCAGGATTTTTTATCCAGAGGGTGGGGCCACGCAGGAGGTTGCTCCCGTTGGGGTTTATGCCACTGCTCGACAGATGGGCAGTAGAGATAATTCTTCATCAGACATCTTCAATCTCACTTGGGTGCTTCCAGTCACTACTTCCACCCACGGCCATCTAGTTCGACTTCACTTCTGCGACATAGTCAGCAAAGCCCTCTACCAGCTTTATTTCACCATCTACATTAACAACTACACCGTTCTCGAAGATCTCGACCTCTCAGCCCAACACATGACTTTAGCTTCTCCATACTACATCGATTTCCTTGTAAACTCTACTCCTTCAGGCCACATTCGCATCTCCATCGGCCCATCTAATCGGATCCTATCTCCGAATATGAACGCTATACTCAATGGCATAGAAATCATGAAGATTCAAACCGTTCCCGATCTTTTCCCAATACTTGAAAGCAAGAAGAGCTACGTTAATGTCATAATATGGTACGTTCTCGGAAGCGTTGCAATTTTCTGTTTGTTATCATTGTTAGTAGTAGTTATACTGCACAAATATCCTAAGGAGGAGGAGAAAAAGAAAGTGATAGTGTTAGGAAATTCTTACAGCAATCTTAGTCTTAAGATCGGTTTCTCTGAAATCCTTCAAGCAACAAACAACTTTGATGAAAAATGCATGATAGGATTCGGAGGCTTCGGAAAAGTGTACAAAGGAAAGCTGAAAGACGGTTCGTGTGTAGCAGTGAAACGAGGATACACAGACGAAGAAAGCATTAAAAACGGATCCGACTCCAAACAAGGCGTAAACGAATTCCAGTCCGAAATATCCATCCTGACAAAAATCCGGCACCGCCACCTCGTCTCCCTTATTGGGTACTGCCACGAGCGGTCCGAAATGATTCTAGTGTACGAGTTCGTCCCAAATGGGTCGTTCCGCGACAACCTGTACGGCCCGTTAAAAAGCCGTCACCTGTCATGGAGGCAGCGGTTGGAGATCTGCATTGGGGCGGCTCGTGGACTGCACTACCTTCACACCGGGACGGCCCACGAAGTCGTGATACACCGGGATGTTAAGAGCTCGAACATATTGCTGGATGAGGAGTTGAAGGCGAAGGTGGCGGATTTCGGGCTGTCAAGGTCGGTCCGGGTCGGGTTGGAGGATGAGGTGAGTACGGGCGTGAAGGGGAGTTTCGGGTATTTGGACCCGGAGTATTTTAGGACGAGGAAGCTGACAGAGAAGTCGGATGTGTACTCGTTTGGGGTGGTGCTTCTAGAAGCGCTGTGCGGGAGGGCGGTGGTGGACAAGGAGCTGGACTGGGAGGAGGTCAACTTGGCCGAGTGGGGGATGAAATGGCAGAAGAAAGGAAGACTCCGGAAGATCATCGATCAGAGTTTGGAAGATGAGGTAGATGAGGAGTCTCTGGTGAAGTTTGGGGAGATCGTGGAGAAATGTTTGGAGAAGTACGGGGAGGATCGGCCAAGTATGGGGGATGTGCTGTGGAATTTGGAGTTTGTGCTTCGGCTGCATCTTCAGTCTGGTCAACCAGATGCATAA

Protein

Gene

>AfisC1G06305
ACTTTGTTTACCTCCTCTCTCTTATCCTTAGATATGTTTAGTGGAATCCAGTTTAGAACGAAAGAGACAAGCATTTGGAAGACGTAAAGCTAAATAACAGGCCCACTATTTGTTTCAAGCTTTTTCCAAATGTAGACTCGTTTGGCAAAAGAACACAAAACGTTGACATGAAAAATCAGGCACTGTTGTACGTCGGGACTGCAAAGAAAGTCTTTGTATGATTGACATGAAAAGTCTTTTAATGGAGGATTTCACCAGTCCATAACACAGCCCAAAAGAGGAAAATTTTGAAAGAAACAAAAAAGAGGTGACTGGAATGGACACCCTATCAAAACGCTCACTCACAGCATGAAAAGACCACAACTCGAAATCATCTTCATCCTCCTCCCATTTCTGCTTCCACTTTCTCTATCCTACGACAATTTCAACCCAGAAGACAATTACCTCTTAACGTTCACTCCCGCCTCCTCCTCCCTCTCTACAAACTCCACCCACCTCATCTCACCCACTTCTCCACCCCACATCACCAATAACCCTATCTCCTTCTCGTTCCCTATCTATTTCCCCGGTCCCCACGTACTCCGCCTCCACGTCCTCCCCCTACACCCGCCCACTCGATCCCTCTTCAGCCTCCTCCTCAATAATTTCACCCTCCTAACCCAATTTTCCCCATCCCTCACCGATCCGACAATCGAAGAGTTCTTTTTGGATCTCGAATCGACCCTCACGATAACGCTCGTTCCTTTACGTAAGGAAGCTGCGTATGTGAATGCGGTGGAGCTGTACTCCGTGCCCGAGGAGTTGAATCTTTTGTTGAAGGGACGTGCGCTAGAGGTGGAGCACAGGGTCAATGTTGGAGGCCCGGTCGTGACGGCGGAGAATGACACGCTGTGGAGGAGATGGGTCCCAGACGATGGGTTTTTGGTGGGGGAAAGGAGAGGGGATGAGGTGAGGTTCCAGGGCAGGATTTTTTATCCAGAGGGTGGGGCCACGCAGGAGGTTGCTCCCGTTGGGGTTTATGCCACTGCTCGACAGATGGGCAGTAGAGGTATATGCTTTCTTCTAAGCATCTTCAATCAGAAACCAAGATGTAGTCATTGTTAAAGCACAGGCCCAGGCTAGTTGCACCCCAGTTTTATTGTTGATACCCAACTATTTTTTTGAAAAGAAAAAACATATTTTTATTTCCTTTTTAATTGTGAAATTAATGAAAACCGAGTCTAAATATTAAAAATTTTCGCTTCAGTCACCCTATCCGTTGCGGTTGAGGGTTTTAATTACACCTCACCTGCAGCGGGTGTGGATGATAATAACACACTCGTCCGCATCGAGCGTGGATGACAACAACACCTACGCTTATAACAACATTCACACTTATTGTCGGCCGGTATTTTGTTTTAAGAAAAAACGCACTAGGCTAAGTAAGGGTGCTAATTAAACTTATGTCCGTGGTCAACATGGTATTGGACATGTATGCTGTTATGACCCACGCTCTTGTCAAACGCGGTGGAAAAAAATAAAAATAAATTAACAGCAGAAAAAATAGACAAATGGTAAAATGTTGTGGTGTAAAGAGAAGAACCGAGGTATTGAAAAATAGCTGCTTTTTGGGTGCGGACAGTAAAAACTGGGTGCAAATAGAATCGCCCATGTTCAATTTCTTTCCAACATTTCAGGTACACTATTAATTTCTTAAGCTTTGCTTAAATATTTCTCCAATGGGAATATCTAATTTTTGACATTGTAGGTCAACATTACACCTCGGGGATTATTGATAATTAATATCATGTGTGTTTACACCTCAACATTACTAAATAATACTTAATATTATGTGTGTTATATTAAAAAAATGATTGTGATCTGCTGTTTTGTTTTTGTTATATTACATATCCACATTTCATCATCGTATTTTATCTTTATATTTTATACCTTTTGCTTTTATTTTTTAACCGTAGTAAATAAATGTACAAAACATGATTTGTTCAACAAAAAAAAATGTACAAAACATGTATTATAAGCGTTAAGCATTATCTTTTTAATTTTTAATTTTTAATACCTAGGTAAACTGGAAGCATTAAGCACTTTAAGTACAAACCAAATTGAACTTTTAATATTTTTCTTCATACCGTTACATTCAAGCGAACTAATTCCATATATTTCCCCAACTTGTAAATGATTTTATGTGGAACAAATTTTTTGTATTTATTTACTTTATAAGGTTTATCAGTTATGGGAAATGGGCAAAAATCCAATAGATAAAATAGTTTGATTCTTTTTTTAAAGCTGAAAATTTTAGAAAATAACAAGTACTATTTTAAAAAATTCAATAAAACTCAAGTTTTTTCATCGAAATTTAAAACATTTAAGAAATGGATTTTTTTTAATTTAGGCGTGTTCAAAACTTAATCGCACAAATAGTCCACTTTTAAAACCGTTTACAAATATATGCCACTTTTAATCATGTCAGCGCTACGTTTGCAAAAATGTATACTGACGACATTTCAAAATGCGTCGGTAATATTTTAGAAAATAACACATGCGCATTTTCAAAAGCTGCATGTATTGTTTTTTTTGTTTGTTTAATATGTACGGTTTTTCAAATATATGGGCAATATTTGAAATGTTGATAGTACATTTTTGACAGTGTGTCTCTGACAAAGCCAAAAGTGCCGTATATATATGTAAATAGCTTTAAAAGTGGGGCGTGATTAAATTTTAAAACATGCTTAAATTAAAAAAATTCTCTTAAGAAGGCGAAAATGTGAAGAAAAAAAAATTATAGTATTTTTTATGAATAAAATGAAGAATTATTAAGAAATTTAATTTGAAATAAGCTTAATTTCTGGAAACCATTCTTTTTTTTAATGTTTTTAAACAATAAACAAATGGTAGAGAAGTCTACCGATCGACTTCCACTGTTTTATGGTAATACTAGAACAAATATAAAAAATCACTTGAATGTATATATTCTTTATTCTTTAAAAAATCACTTGAATATATATTCTTTATTCTTTCTTGTTTTTTTATGGTCAGAGAACTACTTTGCATCACCTTGGTAAAACAAATCTTCATATTGATCAGTTTGATTGAAGTCTACGTTGGATGAAAATTATACGTATATGCAAACCTTTTTTAAGTTTTATTTTCCAAATCAATCTCCTTTACAAATTATATACCAAAATCAGCTTCACTTCAAAAATACTACAATCATAGAGACCCAGTTTTGATATTATAGCGCATAGTCTGTATTTTGTATTAGTTGAATTTGAAATCATATCAATGCAATTTCATACCTTTATATATATATATATATATATATATATATATATATATATATATATATATATTAGCCGAGTTTCAAATTGCGTCGATTTAAATTTGAGAAATAAAAATAAAAATTACACTTATTAAATGTGTAATCTTGCCAATGAAAAATTGTTTGAGAAAGAGTATCGACATGGTTTGAGATGGCAATGATGCGAAAACTTAATTGAGTCCCAACACAGCAAAAACAATTCTACATCTGTAAAAAGTTTGAAAAGTGAGCTGAATAGAAAAAAAGATCAAAAAGTGTTAAGAAACCAAGTCATATTAATATATAATTTTCTAAAGAAAAAGCATATCACATGTTATTTTTTCCTGTTCTTTTCTCTTTCTTAAGAAAGGAATATTTGATATTGTTTATCTTGAAAAATAAAAATAAAAATATGGGACATATTTAGGTGCTACATAGGGCGCTACATACAACGCATTTTATTTATCATTACATCAAGTTAGTTTATTGAGGCATGGCTCAAACATTACTTCCTAAACTACAGATAATTCTTCATCAGACATCTTCAATCTCACTTGGGTGCTTCCAGTCACTACTTCCACCCACGGCCATCTAGTTCGACTTCACTTCTGCGACATAGTCAGCAAAGCCCTCTACCAGCTTTATTTCACCATCTACATTAACAACTACACCGTTCTCGAAGATCTCGACCTCTCAGCCCAACACATGACTTTAGCTTCTCCATACTACATCGATTTCCTTGTAAACTCTACTCCTTCAGGCCACATTCGCATCTCCATCGGCCCATCTAATCGGATCCTATCTCCGAATATGAACGCTATACTCAATGGCATAGAAATCATGAAGATTCAAACCGTTCCCGATCTTTTCCCAATACTTGAAAGCAAGAAGAGCTACGTTAATGTCATAATATGGTACGTTCTCGGAAGCGTTGCAATTTTCTGTTTGTTATCATTGTTAGTAGTAGTTATACTGCACAAATATCCTAAGGAGGAGGAGAAAAAGAAAGTGATAGTGTTAGGAAATTCTTACAGCAATCTTAGTCTTAAGATCGGTTTCTCTGAAATCCTTCAAGCAACAAACAACTTTGATGAAAAATGCATGATAGGATTCGGAGGCTTCGGAAAAGTGTACAAAGGAAAGCTGAAAGACGGTTCGTGTGTAGCAGTGAAACGAGGATACACAGACGAAGAAAGCATTAAAAACGGATCCGACTCCAAACAAGGCGTAAACGAATTCCAGTCCGAAATATCCATCCTGACAAAAATCCGGCACCGCCACCTCGTCTCCCTTATTGGGTACTGCCACGAGCGGTCCGAAATGATTCTAGTGTACGAGTTCGTCCCAAATGGGTCGTTCCGCGACAACCTGTACGGCCCGTTAAAAAGCCGTCACCTGTCATGGAGGCAGCGGTTGGAGATCTGCATTGGGGCGGCTCGTGGACTGCACTACCTTCACACCGGGACGGCCCACGAAGTCGTGATACACCGGGATGTTAAGAGCTCGAACATATTGCTGGATGAGGAGTTGAAGGCGAAGGTGGCGGATTTCGGGCTGTCAAGGTCGGTCCGGGTCGGGTTGGAGGATGAGGTGAGTACGGGCGTGAAGGGGAGTTTCGGGTATTTGGACCCGGAGTATTTTAGGACGAGGAAGCTGACAGAGAAGTCGGATGTGTACTCGTTTGGGGTGGTGCTTCTAGAAGCGCTGTGCGGGAGGGCGGTGGTGGACAAGGAGCTGGACTGGGAGGAGGTCAACTTGGCCGAGTGGGGGATGAAATGGCAGAAGAAAGGAAGACTCCGGAAGATCATCGATCAGAGTTTGGAAGATGAGGTAGATGAGGAGTCTCTGGTGAAGTTTGGGGAGATCGTGGAGAAATGTTTGGAGAAGTACGGGGAGGATCGGCCAAGTATGGGGGATGTGCTGTGGAATTTGGAGTTTGTGCTTCGGCTGCATCTTCAGTCTGGTCAACCAGATGCATAAAGAAAAGTTTATAAATGGAATGTTGTGTGTTATGAGATACTGATTTGCTTTGAATTTGAGAAGTTTCACATTGTAAAGGCTAAAGATATTGTTATCTGATTAAATTATTTATGATGTTTTAGTTTAGTGCCGATCAACTAATCAAATTAGGCTCTTGATGTAATATGTTTTGGTATTGTATCAACCCTCTCCAACATCAGTGAATTCACTGCCATTAGCAGCAGAGGTGTCTCTTTATCTATCTTGGTTCTGTGTACCAAGTGACATTCAATCATTTGTAATAAGAAGATTTAAGCTATTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_029124452.1	1.4e-175	probable receptor-like protein kinase At5g24010
Swissprot	Q9FLW0.1	4.4e-155	Probable receptor-like protein kinase At5g24010
trEMBL	A0A8K0IK02	1.5e-179	Receptor-like protein kinase HERK 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G24010.1	44.70	6e-164	574		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06305	AT5G24010.1	774	335	19	12	710	11	766	44.70	6e-164	574
AfisC1G06305	AT4G39110.1	702	316	20	65	710	118	802	44.59	4e-151	532
AfisC1G06305	AT2G21480.1	700	317	21	66	710	118	801	44.57	1e-150	530

Ortholog group

Species	Genes
Allium cepa	g154020.t1
Allium fistulosum	AfisC1G06305
Allium sativum	Asa7G03187.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12819.4	Malectin_like	Domain	109	342	86.7	1.5e-24
PF00069.22	Pkinase	Domain	424	700	152.0	1.8e-44

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0050832	P	defense response to fungus
GO:0004672	F	protein kinase activity
GO:0030139	C	endocytic vesicle
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009705	C	plant-type vacuole membrane
GO:0009723	P	response to ethylene
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009786	P	regulation of asymmetric cell division
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009793	P	embryo development ending in seed dormancy
GO:0009986	C	cell surface
GO:0010311	P	lateral root formation
GO:0010483	P	pollen tube reception
GO:0030308	P	negative regulation of cell growth
GO:0042803	F	protein homodimerization activity
GO:0043680	C	filiform apparatus
GO:0044425	C	membrane part
GO:0046777	P	protein autophosphorylation
GO:0048829	P	root cap development
GO:0051510	P	regulation of unidimensional cell growth
GO:0051924	P	regulation of calcium ion transport
GO:0080147	P	root hair cell development
GO:0097275	P	cellular ammonia homeostasis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network