result

Gene information

Detail information of AfisC1G06414

Location

Gene	Chr	Start	End	Strand
AfisC1G06414	chr1	1160282985	1160285619	+

Sequences

CDS

Protein

Gene

>AfisC1G06414
TGAGTTAACAACACAAGTTCTCTTATTTATATAATAATATCATCAAAGCATATAAATTCTGTAGTAGTGGTGACATACCCTATGCTTCAGCGAATCCATCTTAATAAACTTTTTATTTGTTGTTTTTAACTTTGAGTATTGCCACTTTCTCCTCCGTGCAATTTTTAATATATATTTGGATCAGCATAATTTCAACAAATAGATGTTTTGAAACTATTTTAATATGATCGCCAGCAAGTTTTTAATATTTAAACAGTTTGGCCTTGATTTCATTTTATTTTATTTGTTGAAGAGGAAATGTCGAAGATAATGGGGAAAAAAAGCATAGTCAATATTTACTAACATATAATTGATACTTACCACAGTACTTGCTATAAGAGCATCACATTTTTGGTTTTTGGGGTCCATGCACAACACAATTATGTTTCGATCTGCCAGTTTCTCAATCAAAAGACCAAGTTTTATAATACAACATATTTCCTTGATACTTACCAAGTTATGTTTCATTTGTAAGTACTCCAAGTTGCATCTTTTTTGTATGGGTGCAAGATCTTGACTCTAGTGTATGCAATTTTAACATTCTATAGCTTTAGCTAACAATAATATCTCTAACATTTTCAAAATGTTTGTATATGCCAAGTACAACACCAATATCCGAGTATTTGAGTTAAATATGTTCCTCTAAACTCACTTTCATCAATTGTCTTCATATCAAGAGTACTCTCTGAAGCTAACATGTCTATCAAATTTCCGCAGTGTATCTACTTAAGACTTTTTCTTTTTCATGACTCACGAAGATCAACTTAATTTCCTAATTGCATTAGTTTTTGCTTAACAGATTTCTGTTTACACATACAAAGTTAATAAAGTATATTAAAAAATACTAGTTTAAAGTGCTCCACAATATTTATTAAGTTTGGTATCAAGAACTATATTTCTTCTGTTCCTAGAATGCCATATAGTTAGCAAAAGCAAACTAACAAAAGCCAATGCATTAATTAAGGCATCAAAGGCACATGATCCATGAAAAGTAATCTTAAAAAGCATACTAAAATATCCTATAACTAACTATATATATAACCAGTGAGCTATGAGCACAGGATATGTATAGAAAAACACACTAACTAAAGTAGACAAAGTGAGAGCAATGGACGCCAGTAGCGTAAAGAAAGGTCCTTGGACTTCCGAAGAAGACTTGATCTTAGTCACTTACATCCAACAACACGGACCTCGAAACTGGAAATACGTCCCAGTCAACACAGGTATCAATTATTACACATTTTCCTGATATATCTGCAAATCAAAATTCAAAATGAGTATTGCATTGCATATTAAAGTTGCAATAAAATTTCAGGATTAATTAGATGCAGCAAAAGCTGCAGACTGAGATGGACAAACTATCTCAGGCCAGGAATAAGACGAGGCAATTTCACCTCACATGAAGAAAAGATTATCATTCATCTTCAATCTTTGTTAGGAAACAAGTAAAATATCAAAATCTCCAAATCAAAACAAACTTAATACTATTTTTATATATATCATATATCCTCATACGTAATGTTTCCGTTTAGGTGGGCAACAATTGCATCATACCTGCCACAAAGAACAGACGATGACATCAAAAACTACTGGAACACACATCTCAAGAAAAAAATAAAGAATTACAAGACAGAAACAGACAACATAAACATTCATCTTGAGCTAGAACCTGAAATTGAAGAAATTAGAACTCCACAGCCTACATTATCAAGATTTTATAACACATCGTCTACATATGCAGCAAGTGCTGAAAATATATCAAGGCTTTTGAAATCTTGGACTGAACCCACTTCAGATTCTACTGCCACTAGCTGTACAACTGCTGTTACTAGTAATGCAAATCAAGAACATGGAGAGAGTGCATTGTTTGATATTAGCCAATATGAATCTTTGGACTGGAATGATAATTCATCTATGTTCAAGATGTTTGAAGATGAAGATGCTGCTGGAGAAACTGAAAATTTTGCAGAACAATTCAGGTGGATACAATGAAATCAAGCTATAGTTATTAATTATAACTATTGAATCAGTGAGAACACAGAACCATATGCTCATCAGTTGTACAATGTCAAGGGGTGTGTTGGTTAGTTGCCTGTATCATCTTAATTGTTGCCAAGTTCATAAAAGTTCATCCTGTTTAACGATTTTTTTTATTTCTTTAATCATAAGTTGAATTCGAATATATGACCACGTAAATTAGCATAAACACAGAAGCAAGGTAAAGAGTGTACGAATAAAAAATTCATTTCAGTCATAATTTAACAAATTATATTTATTCAAATCAACCCAAAATCACTACCTATGTTCAAATCAATAGCTTCATTCGATTCAATAACTAATTCAAGTAAAATCCTAAATAATTAGATTTAAATCAGCGAGAATTAAAACTATGGTTAGCAAATTACCATTACTATTGATAGGATCAGATGAACGGAGGAAGATGATGCCAAAGTGGCATAGAATGTTGATTTGAAGCGCCTAGTTTGGATTGACTTTTGCTCGACGACAAGAGAAGAAACCTGCGATCGACATTTTTTTTTGTTTTTTTTATGAAAACACATTCTATTTTGATGGCTTCTAATTTTTTTATGTGAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244171.1	1.8e-16	myb-related protein 306-like
Swissprot	Q8GYP5.1	1.8e-13	Myb domain protein 60
trEMBL	A0A5P1FIA7	2.2e-16	Myb-related protein 306-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G08810.2	46.46	4e-17	84.0	AtMYB60;MYB60	myb domain protein 60

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06414	AT1G08810.2	99	44	2	1	99	1	90	46.46	4e-17	84.0
AfisC1G06414	AT1G08810.1	98	45	2	1	98	84	172	44.90	1e-15	79.0
AfisC1G06414	AT3G28910.1	145	41	4	1	89	84	228	33.10	5e-12	67.0

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	3	29	27.7	2e-06

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0010118	P	stomatal movement
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0045165	P	cell fate commitment
GO:0048765	P	root hair cell differentiation
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network