result

Gene information

Detail information of AfisC1G06473

Location

Gene	Chr	Start	End	Strand
AfisC1G06473	chr1	1174470313	1174474849	+

Sequences

CDS

>AfisC1G06473
ATGTTGGACTTAAACCTAGAATCTGAATCGAATCTTGACGCTCAAATCGACGATTCGAGGTCATCCAACTCCTCCGTTCTCATTGGTACCGATGATTCCTGCTCTAACAAGGGAGTGGAATTGGGATATGGGCTCCAGTTTGACATTCTGAATGAAAACGAGGGCTTTGTGACGAAAGAGTTCTTTCCAGCTCCGCCTCCGGCGACGGAGGCGGATGCTTTTTTGCCCGGAATTGAGGTGAGGGCTTTGCCGAAGAAGAGCAGGAGAGGGCCGAGGTCGAGGAGCTCGCAGTATCGAGGTGTCACCTTTTATCGGAGAACAGGGAGATGGGAATCTCATATTTGGGATTGTGGAAAGCAAGTTTATTTAGGAGGATTTGACACTGCTCATGCTGCTGCAAGGGCATATGATCGTGCTGCAATTAAGTTTAGAGGAGTTGAAGCTGATATTAACTTTCATCTAAGTGATTATGATGAGGATTTGAAGCAGACCGGGAATTTAAGTAAAGAGGAATTTGTTCACATACTTCGGAGGCAAAGCACTGGATTTTCAAGAGGGAGCTCAAAATATCGAGGAGTTACTCTCCATAAGTGTGGTAGATGGGAAGCTAGAATGGGACAATTTCTTGGAAGAAAGTACATATACCTTGGGTTGTTCGATAGTGAAGTAGAGGCTGCAAGGGCATATGATAAAGCAGCTATCAAATCTAATGGAATTGAAGCTGTTACCAATTTTGACCTAAGTACGTATGAAGGAGAAATTCGTGACAGTGAAGTTGTTGGCCATGAGCTGGACTTGAATTTGAGCATTTCACAACCAAATGTGAGTAGTCCGAAGAAAGGAGAAAACTGTACGAGCACTCCTTATCAGTTAGGCGTTTATGAGTCTTCTGATGCAAATAGAGCCAGGGTTAACAAACGATCACTGATTTTTGGCACTCAACCTCATAGCTTGGAAATCACATCCAAGCATTCCCAAGCTTTGAGTGCTCCATACCTTAATCTATTTTCGTCTTCAAAGGAAAAAGCAAAAGAGGAAGGATTCATGATAAATCCATCCAATTTTCACAACATGCAATGGGGAACTAATGTCCCAGCAGCTCCATTATCGATGTATGCAGTATCATCAGGATTCTCCGCAAGTGCAGCCAGCACTCGGTTTTTTAATCAACTTCCTCCACCACCGTCTGCGGTCTATTATCATTGTAGGAACTGA

Protein

Gene

>AfisC1G06473
GTTTTCAAGTGACCCTTCTTTTTAAGTAACAACAAAGGAATATTAAAAATCAAAAGGAAGAAGAATACATTTGGAAAATAAAATTCGAACTTGGGTTTCCAAATATAGCAATGTTGGACTTAAACCTAGAATCTGAATCGAATCTTGACGCTCAAATCGACGATTCGAGGTCATCCAACTCCTCCGTTCTCATTGGTACCGATGATTCCTGCTCTAACAAGGGAGTGGAATTGGGATATGGGCTCCAGTTTGACATTCTGAATGAAAACGAGGGCTTTGTGACGAAAGAGTTCTTTCCAGCTCCGCCTCCGGCGACGGAGGCGGATGCTTTTTTGCCCGGAATTGAGGTGAGGGCTTTGCCGAAGAAGAGCAGGAGAGGGCCGAGGTCGAGGAGCTCGCAGTATCGAGGTGTCACCTTTTATCGGAGAACAGGGAGATGGGAATCTCATATTTGGTTTGTGATTTTTATATTTTCTTGGATTTTTTCAAAAACCTGTTTTGGTGCTTGTTCACATGTTTTATTTGTTTTTTGTGCAGGGATTGTGGAAAGCAAGTTTATTTAGGTAAGTTTAATATATAGAAAGTTAAATTGAAGAAAACTTTTTTATGCTTTTGAAATGAGCTGAATGAGTTTTTCTTCTGCTGTATTTTAGGAGGATTTGACACTGCTCATGCTGCTGCAAGGTTTAATTTGATATTTTACAAACTTTACAAGTTCAAAATTTGTAATTTGAGCAATATGCAGGGCATATGATCGTGCTGCAATTAAGTTTAGAGGAGTTGAAGCTGATATTAACTTTCATCTAAGTGATTATGATGAGGATTTGAAGCAGGTTTGGATATCATATTGCCCGTTGGTTAATATACTATTAGATACAAATTTGTAATTATATACGTCCGTTTTTATACTGATGGGTTGAACTGATGCTTTTGTATAATTCAGACCGGGAATTTAAGTAAAGAGGAATTTGTTCACATACTTCGGAGGCAAAGCACTGGATTTTCAAGAGGGAGCTCAAAATATCGAGGAGTTACTCTCCATAAGTGTGGTAGATGGGAAGCTAGAATGGGACAATTTCTTGGAAGAAAGTATGTATCATCAACTCTTATGTTTTCTCTCATAATTATTACCATCTTCAATAAACAGTTTTCATGCAAACTTCTGATGGATTGTGTTATAAGACCCACAAGCTTTAGGTTATTAACAAAAGAAATTAATGCCATTATTGTAAACTCAAAAGGATGCGCGCACACAATCTTCCTAGTACTGAATTACATTCTTGAAGTGAAACAATGTTTCTTGGTCAATTGGTTGATTGATTAACTCTGTAACTATTCTTAATAGGATAATGTCTAACTGGCTAACACGTGCTATTGTATTATGTAAACTATTCAACCTCAATATCTTATGTGATGGAGAAGGTTATTTGTAAATGAAACACCTATGGATGAAAGCTTGATGCTTGAATGCAGGTACATATACCTTGGGTTGTTCGATAGTGAAGTAGAGGCTGCAAGGTCCTGCACAGTCTTAAATTTGAATTGTTTGTTGCATTGAAATTCATAAGTGCATATTTTATTTCTTAACTTCCAACATGAATTATGCTTATGGTTTGTTTGTTTCATCAGGGCATATGATAAAGCAGCTATCAAATCTAATGGAATTGAAGCTGTTACCAATTTTGACCTAAGTACGTATGAAGGAGAAATTCGTGACAGTGAAGGTGATAATCTTCCTCTTTTAAGTCCCTTAAAGTGATTTAATCAAATATCGTTTCGCTTGAACTTGTTGAATATTGTTTCTAATTTCTGATAGTTGTTGGCCATGAGCTGGACTTGAATTTGAGCATTTCACAACCAAATGTGAGTAGTCCGAAGAAAGGAGAAAACTGTACGAGCACTCCTTATCAGTTAGGCGTTTATGAGTCTTCTGATGCAAATAGAGCCAGGGTAACAATCAATTATCTTTTATGTGATTATAGTTTGTCATGTGCGTGTGTATACATATATACATACACACACAGATAAATACACACACATATACATACATAGATATACATACATGTGTGTGTAGCCACTACACCTCCGTCTATACCCATATGATTTTTTCAAGCTACACAATTCGAAACTGAATAAATATTTGTAGATATGTTCTTACATGTCACATGATCATTCTCACAAAATTTGGTTATTTAAAATGCGAACATATTCAAATAATAGTCAAGATGTTATTGTATCTTTTTTTTTGAACACGATGTTCATAGTTATATAGTAAACTAGGTTCGAATTGCTATTCTAACTAATAAAAAGCTTATCATGATTTGAGTTAATTATATGAAGCTAAGTTCAGTGAAATCCCAGAAATGCAAGATTTTTTTTTTTCATTTTATAGTAGTCTATTCAATTGATTGAATCCATGTTGCGTAGTGAATGGTGACAGGATGTTAGTCAATATTAATATAGCAGTAAACACCAAATACTCATATGAGCAGTTAACCATTATTTGTGATAAATTTAAATTAATTCATTTGATGTTATTGATATGTGAGATATTTTAATTTAGGGGTGTATCAAATCTTTAGTTCTATTATAACTTTTACCACCTTGCAAATTTGAATCCTTGTCTAAATAAGTAAATTTATTAATGTTTCTAGGTTAACAAACGATCACTGATTTTTGGCACTCAACCTCATAGCTTGGAAATCACATCCAAGCATTCCCAAGCTTTGAGTGCTCCATACCTTAATCTATTTTCGTCTTCAAAGGTATGTTGGTAATTTACTTATCCATTTAATGTTTCTTTGGAAGAGAATTGTTTGTCTAAAGCTAAAAAAGTTATCTTGATTCTTAACATGGGTCTACACATGTTCACAAAATAATTAGCTGAACGTCTTTTGTTATATTTTATCAATATATTTCATTTTATTTCGAACATCACCACAAATCAACTTCATGATGGGACCAATTCATTTACAAAGAAATAATTATGCTCTTTCTCATATATTATTATAATTGCCACAAAAGCGTTTAGGGAAATTGCTCATACGAACCAGTTTACGAAATGATTGTCAATTTTAAACGCAATATGCAATAGCGTTAAACTTGCAATGCAACATCCGGGGTCTATTTGACGTATGATCGATTTGATTATGTTATCAAAATTTAGAAACTCGTTTGAACAATTAGTGTGCAATGCAATATTCACTACATATCACTTTATTTAATATTGGCTTCATATTTTCGTAAGCCAATTGCACATATTCGGTGCATTATTAACTGTCAATTTTGAATAATAAAAAATCTGTGCAATTGCTTATTTTCTCACATTTATTGCTACTCGGTATTATTTGTTTTTCAGTTATTAAAGAGGTGAATTACACATTAGCATTTTTTTTGATACAACCGTATATAATATAAAGTTGTGAAATTTCACTTTGTCTGACTCTTTCAAATCTCTTTCGCTCTAATTTTGTTGTTAAGAGTTTCTATTCAGATTTTGCTCTCTATTTTGTTTTCATCAATCATGATCCTATACAGCTAAGCATTTTGCTCTTCTTCGACTCTTATCTATTTATTTTTATATTTTTAGTTCATCTATGAAATGCTAAAAAAATGAATATAATTTTCTAAACTTCGTTGATCATGCAGTACGGTGGTGTCTATTTACATATGCGTGTATACCACCTGCACATATTTTCGTGTAGCACCATATAATTCTCTTAGTAACTTTAATAAATGGTAACCTAAAATTGGCATTCCTGTAATTTAACAATTTGCAAATTGCATTCATAAGATGATAATCTTTGCATGCATAGTTCATGTACTTAGCAGTGAGGAAACATGAAATCAATGAGAAAACGGAAAGCTACGAAGTCAATCTTTCAACAATTTGGCCTGGATTCAGTATTACATATTGTCGAATGGAATTGCAAGTTCAATTTTAAGACTAACAATCAGTTTCTACATTTTCCATTTGTTCTGGTTGTTGAATTAATAAAATTTAATTTAATTGGATACAGGAAAAAGCAAAAGAGGAAGGATTCATGATAAATCCATCCAATTTTCACAACATGCAATGGGGAACTAATGTCCCAGCAGCTCCATTATCGATGTATGCAGTATCATCAGGATTCTCCGCAAGTGCAGCCAGCACTCGGTTTTTTAATCAACTTCCTCCACCACCGTCTGCGGTCTATTATCATTGTAGGAACTGAAGTTGGTGGATGGATACATACTCTATAAATTTATGTGATAAGCATGAATTATGATTTGAACCATTACCAGTTTATAAACATTTTTATAGGAAATGCATTGCGGAGAAGCAAAGAAAAGTGGTGCATTTTTTGTATTAAACCATATCTGCTGTGATTTTATTATGTAAAGTTTTGTTGTATTTACGTACTCTGTTTTTTATCATGTTGAAATCAGAAAAAAGATTCACGAATTACTCATCTTTTTAAGTCATGCAAGTCCTGTGATTAGTGTACCTATTTTATCGACTAACTATTTCACTGTATGATTGCAATATTTCGTTATT

Functional annotation

Database	accession number	e-value	annotation
nr	ONK62414.1	8.0e-117	uncharacterized protein A4U43_C07F3620
Swissprot	B8AXC3.2	2.6e-96	APETALA2-like protein 1
trEMBL	A0A5P1E9B4	5.8e-117	APETALA2-like protein 2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28550.3	47.67	1e-82	303	RAP2.7;TOE1	related to AP2.7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06473	AT2G28550.3	472	151	13	1	396	1	452	47.67	1e-82	303
AfisC1G06473	AT4G36920.2	194	28	2	85	271	119	311	81.44	2e-75	280
AfisC1G06473	AT4G36920.1	194	28	2	85	271	119	311	81.44	2e-75	280

Ortholog group

Species	Genes
Allium cepa	g198961.t1
Allium fistulosum	AfisC1G06473
Allium sativum	Asa7G02976.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	96	145	36.4	4.3e-09
PF00847.17	AP2	Domain	188	235	33.6	3.1e-08

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677	F	DNA binding
GO:0005730	C	nucleolus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009408	P	response to heat
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009658	P	chloroplast organization
GO:0009737	P	response to abscisic acid
GO:0009873	P	ethylene-activated signaling pathway
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010093	P	specification of floral organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019953	P	sexual reproduction
GO:0030154	P	cell differentiation
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048316	P	seed development
GO:0048481	P	plant ovule development
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09284	AP2; AP2-like factor, euAP2 lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network