result

Gene information

Detail information of AfisC1G06551

Location

Gene	Chr	Start	End	Strand
AfisC1G06551	chr1	1187045231	1187047753	-

Sequences

CDS

>AfisC1G06551
ATGGATTACAGTTCAAGTGAAGACGACAAACTCATCGAAGACTTCACTGATATTGAAGAGGATACCTCAGTCGCTGGAGTCGATCAGCATGCACCACATCGGTTTCTTGAGCATGGAGAAAACTCAATGGCGTCTATAGATACATCCAACGGAGACCTGTTCTCTGATGAAGCAGATATAAAAATCCCAGAACCTTTTCTAGGTATGGTTTTTGATTCCGATTCAGCTGCAAGAACATTCTACAATAACTACGCAATTCAACTAGGATTTGGAATCCGTGTCGCGCGGTCTCGTAGAGAAAAAAGGAAAGGTGTAGATGTATTGGTCATGAAGAGATTTGTATGTTTAAAAGAAGGGCATCACAAGAAGAAAACCATGGATTATGCCATAAAAAAGAAAAGGAAGCGTCTTTCTGTTAGAGATGGGTGTCCAGCAATGATGGAGGTGGTTAGAAGAGCGCCCGATAAATGGGTCATTACTAAGTTAGTATTGGATCATACTCATGTTACTGTAAGTCCTGATAGAGTTAATGACATTCAATTTAATCGCTTATCAGGTAAAGATAAGGAGCACGATGACTACTTAGATGAAATGAGGTTAAAAGTATTTGGAGAAGGAGATGCTCAAATTCTACTCGAGTATTTTAGAAAAGCTCAAAGTGTGAATTCTGGTTTCTTCTATAATATGCAAGTTGATAGTAGGAACCGTATAACCAATGTATTTTGGGCTGATGTAAGAGCTAGACTGGCGTACAATTATTTTGGAGATGCTGTAACATTTGACACAAGCTATAAGAAGAATGAGAATATGCTGCCGTTTGCTACATTTATAGGTCTAAATCATCATGGGAAACCTGTTAATTTTGGATGTGCTTTGGTTATCGATAAGACTAAATCATCTTTTACATGGTTGTTTGAAACTTGGTGCAGTGCTATGTATGGACCTCCACCTTTGTCATTTACTACAGATCAAGGCAATGCTATAGAGGCAGCGGTTGCTAAAGTCTTTTCTAATACTCGGCATAGATTATGCAAATGGCGCATTTTATCACGTTGCAAAAAGAAACTGTTCGACATCTATCCTAGATATCCCACTATTTATCATGACTTGAAGAAATGTGTAATTAGTTCTGATACACCCGATGCTTTTGAAGGATATTGGGGGATGTTACTTGACAAATATGGTTTACAAGATAATGCATGGCTTCAATCAATATTCAATATTCGGAATAAATGGGTTCCGGCATATCTAAAGGATTCTTTCTTTGCAGAACTATCCACGACCCAAAGATTGGAAACTATGAACCAATTCTTCAGGAAGCATTTTGATTCTAAGACTCCTTTAATAGTTTTTATCAACAAGTTTAATGAAGTCAATGATACACGATATGAGAAAGAAGCAGAAGATGATTTTGCTTCTTTGAATACCCAACCAATTATGAAAACCAACTCACCAATGGAAAAGCAAGCATGGAATATTTATACAAAATCAGTATTTGAGAAATTTCAGGTAGAACTAACTGAAGCTCTTGAGCACTACGCAGTTAAAATACAGGATGGACATATAAGCAAATACTCAATTGGAAAGGATGGAGATGTTAGAAATAGACATTTTGTTGCTTTTAATACATCTGAAAAGAAGGTGATCTGCACGTGTTTCAAATACGAGGTTTCAGGTGTTTTATGTAGGCATATGTTGGTCGTCTTGGTGCTGAATGGTGTAGTTTTAATTCCAGACCATCATATATTGAAGAGATGGACCAAGAAAGCGAAGAGTGGAATAGTGTCGATTGAACGAGGAATTGAAGTTAGAAGGTTTGGTCAAGATTCATCAAGTCAATGGTATGCTAATATTTTTAATGATGCTATCAACCTAGCAGCAAAAGGAGCAGCATCTGCCCAGGCTTATAAGTTTGCAAAGGAAATGCTACAAAAAGCTTTCTCAGATATTGTTGATCTTAAATCTAATGCCGTTCACTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249250.1	7.4e-269	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	1.2e-127	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A6I9QTM8	2.6e-252	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	37.44	2e-125	446	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06551	AT4G38180.1	641	354	8	49	646	53	689	37.44	2e-125	446
AfisC1G06551	AT2G27110.2	635	346	12	39	646	30	631	36.06	2e-112	403
AfisC1G06551	AT2G27110.1	635	346	12	39	646	30	631	36.06	2e-112	403

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	80	169	72.1	4.5e-20
PF10551.6	MULE	Domain	258	349	86.0	1.6e-24
PF04434.14	SWIM	Domain	550	569	19.0	0.00074

Gene Ontology

Accession	Ontology	Name
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0010017	P	red or far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0048518	P	positive regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network