result

Gene information

Detail information of AfisC1G06707

Location

Gene	Chr	Start	End	Strand
AfisC1G06707	chr1	1218558381	1218560658	+

Sequences

CDS

>AfisC1G06707
ATGCGTCAATCTCTCCTCCTCTTCCTTTTCTTCTTCCTCTTCGTCCCAATTTTGACGACGTCCTTATCGGATCCGGAACTGACTGCCCTTCTCCAATTTAAATATGCAACCCGACCTCACCCATCTACCCGACTTATCTTCAAAAAGTGGTTTCCACTCACCCACCACTGCTCTTGGCCCGGCCTCAAGTGCGACTCCTCCCGCCACGTTATCTCCCTCAACCTCTCCACTGGCAACTTCACCGGAGTCAAACTCAGCTGCGGTTCTCTTACTGCCTCCCTTGGTAATCTCACCGCCCTCAAAATTCTCTCTTTGCCTTTTTTTAGTTTTTGCGAAAATATCCCTGAAAATATATGGAAGTTGGAGAATTTGGAGATTCTAAATTTAGAAGGCAACTACTTTTCTCAAACTATTGATTCTATAACCAAGTTTCCCAAGAAATTGAAGGTATTGAAATTGGGAGGTAACTTGATTAGTGGCGAAATCCCCAAATCACTATCAGATTGCGGAGATTTAGAACTTCTTGACTTGTCCAACAATCGATTTACAGGATCAATTCCTCCAAATTTGGGTAAACTAAAGAGATTAAATTATCTAAATCTAGCAAACAACAATTTTAGCAACCAAATTCCTAGTTTTCCAAACCCTAAAATCTTATACTTTAAAAAGCCTTTACATGTTTACATGCGAGACACGGATTCTGAATCCTACACCAATCCACCTCCAAAAAATAGCGGTTTCACTTCAATTGAAATCGCATCCATATCTTCTGCCTCTGCCGTTGTCGCAGTCCTTCTAGCACTAATCATTCTATACATTTACTCAAGAAAAGTTAAGCTAACTTCTTCAGTTGCTTCGCTTGTAAAGCACAAAGTCATCATTTTTTATGATATTGGATATCCAATAACCTACGAAAGTGTAGTACGAGCCACGGGCAACTTCAATGCAAGCAACTGCATTGGAAGCGGAGGATTTGGTGCTACATACAAAGCAGAGATTTCACCGGGAGTAGTTGTTGCTATAAAAAGACTATCAGTAGGAAGAAACCAAGGAGCTAGGCAATTCCATGCTGAAATCAAAACTCTTGGTAAATGCCAACATAGAAATCTTGTTACTCTAATCGGGTACCATGTTGGGGAAGAGTTTCTAATATACAACTACATGCCTGGTGGAAATCTAGAAAAATTTATACAGGAAAGATCGAAGCGAGAAATTAGTTGGAGGATCCTTCATAAAATAGCATTAGACGTTGCTAAGGCTCTTTGCTATCTTCACAACCAATGCGAGCCTAGAATCATACATAGAGATATTAAACCTAGTAATATATTGTTGGATAATGAGTACACCGCTTACATTTCCGATTTTGGTTTGGCAAGGCTTTTATGTGATAGTGATACCCATGCAACTACTAACCCTACGGGTACTTATGGATATGTGGCGCCTGAATATGCAATGACACGCAGGTTATCCGATAAAGCAGATGTGTATAGTTATGGCGTGGTTATTTTGGAGTTGCTTTCGGATAAGAAGGCACTGGATCCTTCTTTTTCTCCTTATGCTAATGGGTTTAATATTGTTACTTGGGCTTGTATGTTGCTTGAGCATGGTAGAGCTCGTGAGTTTTTTATTGATGGGCTGTGGAGCGTAGCCCCGCATGATGATTTGGTTGAGTTGTTGAATTTGGCTGTGAGGTGTACCGATGAATTGTATGTGAGTAGGCCTACGATGAGTCAAGTTGTGAGGACTTTGAAGGAGATTCAACCCCCTTCTTCTTCCATGACTTCATGA

Protein

Gene

>AfisC1G06707
CTGTACTTTATATATCCCTGGGAAAAACAGCACACCTCACCTTTTGCTCATATTTTGAAAATTCTCTCAACAACGAAGAAGAAAAGAAACATGCGTCAATCTCTCCTCCTCTTCCTTTTCTTCTTCCTCTTCGTCCCAATTTTGACGACGTCCTTATCGGATCCGGAACTGACTGCCCTTCTCCAATTTAAATATGCAACCCGACCTCACCCATCTACCCGACTTATCTTCAAAAAGTGGTTTCCACTCACCCACCACTGCTCTTGGCCCGGCCTCAAGTGCGACTCCTCCCGCCACGTTATCTCCCTCAACCTCTCCACTGGCAACTTCACCGGAGTCAAACTCAGCTGCGGTTCTCTTACTGCCTCCCTTGGTAATCTCACCGCCCTCAAAATTCTCTCTTTGCCTTTTTTTAGTTTTTGCGAAAATATCCCTGAAAATATATGGAAGTTGGAGAATTTGGAGATTCTAAATTTAGAAGGCAACTACTTTTCTCAAACTATTGATTCTATAACCAAGTTTCCCAAGAAATTGAAGGTATTGAAATTGGGAGGTAACTTGATTAGTGGCGAAATCCCCAAATCACTATCAGATTGCGGAGATTTAGAACTTCTTGACTTGTCCAACAATCGATTTACAGGATCAATTCCTCCAAATTTGGGTAAACTAAAGAGATTAAATTATCTAAATCTAGCAAACAACAATTTTAGCAACCAAATTCCTAGTTTTCCAAACCCTAAAATCTTATACTTTAAAAAGCCTTTACATGTTTACATGCGAGACACGGATTCTGAATCCTACACCAATCCACCTCCAAAAAATAGCGGTTTCACTTCAATTGAAATCGCATCCATATCTTCTGCCTCTGCCGTTGTCGCAGTCCTTCTAGCACTAATCATTCTATACATTTACTCAAGAAAAGTTAAGCTAACTTCTTCAGTTGCTTCGCTTGTAAAGCACAAAGTCATCATTTTTTATGATATTGGATATCCAATAACCTACGAAAGTGTAGTACGAGCCACGGGCAACTTCAATGCAAGCAACTGCATTGGAAGCGGAGGATTTGGTGCTACATACAAAGCAGAGATTTCACCGGGAGTAGTTGTTGCTATAAAAAGACTATCAGTAGGAAGAAACCAAGGAGCTAGGCAATTCCATGCTGAAATCAAAACTCTTGGTAAATGCCAACATAGAAATCTTGTTACTCTAATCGGGTACCATGTTGGGGAAGAGTTTCTAATATACAACTACATGCCTGGTGGAAATCTAGAAAAATTTATACAGGAAAGATCGAAGCGAGAAATTAGTTGGAGGATCCTTCATAAAATAGCATTAGACGTTGCTAAGGCTCTTTGCTATCTTCACAACCAATGCGAGCCTAGAATCATACATAGAGATATTAAACCTAGTAATATATTGTTGGATAATGAGTACACCGCTTACATTTCCGATTTTGGTTTGGCAAGGCTTTTATGTGATAGTGATACCCATGCAACTACTAACCCTACGGGTACTTATGGATATGTGGCGCCTGAATATGCAATGACACGCAGGTTATCCGATAAAGCAGATGTGTATAGTTATGGCGTGGTTATTTTGGAGTTGCTTTCGGATAAGAAGGCACTGGATCCTTCTTTTTCTCCTTATGCTAATGGGTTTAATATTGTTACTTGGGCTTGTATGTTGCTTGAGCATGGTAGAGCTCGTGAGTTTTTTATTGATGGGCTGTGGAGCGTAGCCCCGCATGATGATTTGGTTGAGTTGTTGAATTTGGCTGTGAGGTGTACCGATGAATTGTATGTGAGTAGGCCTACGATGAGTCAAGTTGTGAGGACTTTGAAGGAGATTCAACCCCCTTCTTCTTCCATGACTTCATGATTGTTTTTGTTGTATACTTGTAAATGTAGAACTAGGTTGCATATAGTTATGTAGTTTTGGAAATTGAGGGGTTTATTAGTTTAAGCTTTGTTCAGTCGTTCCTTTAATTGGAGGCGCACTTTGTGTATAAGGTAGTACTATGAAATTTGTGTTCCGTTATTTTGTCAAAAATGAATAAATAAAGGTTGTGTGATGTGGGTGAATGTTGAATTGAGAAGTTCTTGAAATATGACAAAAAGCATCAGACTTGATCCTGTCAACACTCGATTCAGCTTCACATTTCTGTTCTGCAACTTCTGATTTTGATCATATTTAAATATTTTCTTTTAATCTTTTTGGGTACTTGGTCTTAAGATGATAGTTTTGTCTGTATATTGTATTTGAACCTTTTTGTTAAATG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK75744.1	2.4e-146	uncharacterized protein A4U43_C03F20080
Swissprot	Q9S7I6.1	2.3e-133	Receptor-like protein kinase 2
trEMBL	A0A5P1FCI3	1.8e-146	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G02130.1	53.91	2e-150	529	CLI1;RPK2;TOAD2	receptor-like protein kinase 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06707	AT3G02130.1	562	197	11	84	590	596	1150	53.91	2e-150	529
AfisC1G06707	AT3G02130.1	207	103	6	20	197	40	243	34.78	2e-24	110
AfisC1G06707	AT3G02130.1	133	79	4	88	210	324	452	30.08	7e-07	52.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	24	65	23.1	5.9e-05
PF13855.3	LRR_8	Repeat	123	182	32.6	4.6e-08
PF07714.14	Pkinase_Tyr	Domain	317	583	145.0	2.3e-42

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0004702	F	receptor signaling protein serine/threonine kinase activity
GO:0005777	C	peroxisome
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005524	F	ATP binding
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009556	P	microsporogenesis
GO:0009651	P	response to salt stress
GO:0009664	P	plant-type cell wall organization
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009808	P	lignin metabolic process
GO:0009826	P	unidimensional cell growth
GO:0009846	P	pollen germination
GO:0009942	P	longitudinal axis specification
GO:0009945	P	radial axis specification
GO:0010073	P	meristem maintenance
GO:0010152	P	pollen maturation
GO:0010234	P	anther wall tapetum cell fate specification
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019901	F	protein kinase binding
GO:0051260	P	protein homooligomerization
GO:0046777	P	protein autophosphorylation
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0048508	P	embryonic meristem development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network