Gene information

Detail information of AfisC1G06837

Location

Gene	Chr	Start	End	Strand
AfisC1G06837	chr1	1238353095	1238353553	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	TEY31734.1	3.4e-12	hypothetical protein Saspl_034870
Swissprot	O22533.1	1.7e-11	COLD INDUCED ZINC FINGER PROTEIN 2
trEMBL	A0A8X8X7R0	2.5e-12	Uncharacterized protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G49930.1	50.62	4e-14	73.9		C2H2 and C2HC zinc fingers superfamily protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06837	AT3G49930.1	81	32	2	10	82	37	117	50.62	4e-14	73.9
AfisC1G06837	AT1G27730.1	84	30	2	10	87	32	108	48.81	3e-13	71.2
AfisC1G06837	AT5G43170.1	78	23	2	13	83	29	99	52.56	3e-13	70.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	59	83	46.0	3.1e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001047	F	core promoter binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0006979	P	response to oxidative stress
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009644	P	response to high light intensity
GO:0009737	P	response to abscisic acid
GO:0009793	P	embryo development ending in seed dormancy
GO:0010117	P	photoprotection
GO:0010200	P	response to chitin
GO:0015979	P	photosynthesis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0035264	P	multicellular organism growth
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:0048235	P	pollen sperm cell differentiation
GO:0055062	P	phosphate ion homeostasis
GO:2000280	P	regulation of root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network