result

Gene information

Detail information of AfisC1G06841

Location

Gene	Chr	Start	End	Strand
AfisC1G06841	chr1	1239859453	1239860727	-

Sequences

CDS

Protein

Gene

>AfisC1G06841
CTTTCTCTCTTTTTCCTCCATATAAATGAGTTTGAGTTCTATACTTTGTTAACAAAAACAGTTGGTTTTCCCCCCATATCTCACCATTCATTCATAAATTAATTATTATCAAAATCTGCAATCATTTCAAGTGAAAACACGCTATGTTTATTTGAATATATTATACATCCTAGGCTAACCAAAGTTTCACATATACAATATATACTCGTACATATATAGATATATGAAAAAATGGGAAGATCCCCGTGCTGCGAAAAAGGGCATAGAAACAAAGGAGCATGGACAAAGGATGAAGATGAAAAACTCATCTCTTACATACAAGCTCATGGTGAAGGTTGCTGGAGATCTCTTCCTAAAGCTGCTGGTATTTATTCATCTGCTTTGTTTTATTACTTCTTTGTCATGATCATCTTTTTAATTAATTATCTTCTTTTCGTATTAATTGCATTTACAGGACTTCTTCGATGCGGAAAGAGCTGTCGATTGCGCTGGATAAATTACCTTCGTCCTGATATCAAACGAGGTAATTTTACAGAGGAAGAAGATGAGCTAATTATCAAGCTTCATAGCTTGCTAGGAAACAAGTATGTAGTTCTTGCTTCCTATTATTTTTCTTTTTTTCTTCTTCTGTTTTTTATTTCTTTTTTTTATAATAACTAACAAGTATCAAAGCATTGAAATTATGTTGCACTGTGCAGATGGTCACTGATAGCAAGCAAATTAGCAGGGAGAACAGACAATGAAATAAAGAACTACTGGAACACACACATCAAACGCAAGCTTCTAAATCGTGGCATTGATCCTCAAAACCATCGACCTCTGAATTTAAACTGTGTTCGTGACTACACAAATACAAGTGCATCTTCTATGACATTGGTCTCAAGCAATAAACAAAACATAGAAGAATCAGACGAAAATAGCTCAAGTGGTCGCATAGACTTGGATGATAGAGAGAGAACTATGAGGTGTCCAGATTTGAATCTGGATCTTAGTATTAGCCTTCCTTCTTCCAGTTTGCCTATACAAGAAGCAAGTAGCAGTAGCGTTTGTTTGTGTTGTAATTTACAAGTTGGTAGTAGTAGCGGTGACAAATGTTGCAACGTATGTGGTCAAGTCAAGAGTTGTACAATCAAACTTAGATCATAGCATGCATGTATTTCGTTTTTATGTGGCAAATTAACTGTAGATGCGTACTTGAGGTCAGAATAAAGAAGCACGAAACAATGTTAAATTTTCATTTGAACTCAACAAGGAAAGATTGTTTTTACCTTCTTG

Functional annotation

Database	accession number	e-value	annotation
nr	AQP25674.1	9.7e-131	MYB transcription factor
Swissprot	P81393.1	1.3e-71	Myb-related protein 308
trEMBL	A0A1S5VIK2	7.0e-131	MYB transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38620.1	56.80	2e-72	268	ATMYB4;MYB4	myb domain protein 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06841	AT4G38620.1	250	81	5	1	225	1	248	56.80	2e-72	268
AfisC1G06841	AT2G16720.1	200	61	3	1	190	1	199	64.00	9e-68	253
AfisC1G06841	AT4G34990.1	196	61	3	1	190	1	194	64.80	2e-67	251

Ortholog group

Species	Genes
Allium cepa	g300789.t1
Allium fistulosum	AfisC1G06841
Allium sativum	Asa7G02746.1
Arabidopsis thaliana	AT3G13540.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	56.1	2.7e-15
PF00249.28	Myb_DNA-binding	Domain	67	111	59.5	2.3e-16

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0002213	P	defense response to insect
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009759	P	indole glucosinolate biosynthetic process
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0010438	P	cellular response to sulfur starvation
GO:0044212	F	transcription regulatory region DNA binding
GO:0016301	F	kinase activity
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network