result

Gene information

Detail information of AfisC1G06972

Location

Gene	Chr	Start	End	Strand
AfisC1G06972	chr1	1266185407	1266189723	+

Sequences

CDS

>AfisC1G06972
ATGAAAAAACCAATGGTGATGCTTCTGTTCTTGCTCTTCCTAAGCGGTAACTTCAACCAAGGAGAGGCAGACACCAACCCGAACGACGTCGCTGCAATGCAAGCCCTCTTAAAATCCATAAGCGGCGGTGAAGTTACCGCTTTAAAGTGGTCCCCGAAGACCGACCCGTGCACGTGGGAGCTGGTCACCTGCTACGACGGTCGCGTCACCGCCATCCAGGTCGGGAACAAGTCTCTCCACGGCGTCCTCCCCTCCTCTCTTGGCGAGCTCACCGCCCTCACCCGCCTCGAAGTCCAGAACAACTTCTTAAACGGCCCCTTGCCATCTTTTGGCGGTAACCTCACCGCGTTGCAAACTTTGCTTTTACACAATAACCAATTTACCGAGATGCCCCCCGATTTCTTCAAAGGAATGTCCTCTTTGGAAGCGGTGTATCTGGACGTCAACCCGTTTTCCCCGTGGCCGGTGCCTGACAGTTTGAAGGACTGCGAGTCTCTTGTGAACTTTTCTGCAAACTCGGCTAATATTACCGGAGCTGTACCAGACTTTTTCGGTAATACTTTTCCTAGCTTGGATCATTTAGGTTTAGCTTTTAATTCCTTAACGGGTCGGATCCCGAAGTCTTTTTTTGAATCCGGGATGAGGTCCTTGTGGGTTAATAACCAAAATGGTCCCGGTCTAGTAGGAGACATCACACCAGTTAGTGGCATGATTGAAGCTGAGGAGCTTTGGTTGCATTCCAATTCATTTTCAGGTCCATTACCGGATTTTTCAAATTTGACTAGCTTAAAAGACTTGCGGCTAAGAGACAACCAATTTACCGGAATAATTCCCAATAGTTTGCTGAGTTTAAAGAGTCTGGATATGGTTACACTAACAAATAACTTACTGCAGGGTGCTATTCCAAAATTTCCCAAAATTCGGGTATTGGATTTGGAACCGAAAAGCGAAAGCTTTTGTAGAGTTGAAGGTGGAGATTGTGATGCTAGGGTTAATGTGTTGCTTAATGTTGCGAAAAGTTTCTACTATCCTGTAAAATTTGCAGAGAATTGGAAAGGCAATGATCCTTGTAGTGGTTGGTTAGGTATTACTTGCGATGAAGGTGGTAATATTACAGTGATTAATTTTCAAAAATTGGGGTTGAATGGTTCAGTTCCATCCGAGCTGAGTTTGATTCCTTCAGTTAAGAGGATTTTGTTGGATGGAAATAATTTAACCGGGGTTATTCCAAAAGAGGTTACCGAGTTGCCAAATCTGAAAGAATTAGATTTGTCTAACAATAACTTATCAGGGGAAGTTCCTAGTTTTAGTAGGAATGTGTTAGTAAAGACTGATGGTAATCCTAACATTGGGAAAGACATAGTTACCCCTAAAAGTAGTTCGAGTTCAGGTTCAGGTTCTGATTCAGTTGATGTTGGTCCGAAATCAAGTTCATCTGGGAGTAGTAGCCATGGAAAATCTAAACTAGTGATCATTCTGTGTTCATTGTTGGGTAGTGTATGCTTAATCTCATTGCTATGTGCACTAGCTCTACTTTATTATAGGAGGAGGCAGAACTTTGCTCGTGTTCAAAGCCCGAACCGGACCGTGATCCACCCAAGGTATTCTGGATCGGACCCAGACGCTGTTAAGATCACAGTAACGGGTGAGGGTGCCAATGCAATTGGTTCAGCCACATCTGAAGCTTATAGCTTAGCGAGCAGCAACCGTAGTGATGTTCATGTGGTGGAAGCGGGCAACATGGTCATTTCAATACAAGTGCTACGAAACGTTACAAACAATTTTAGCGAAGAAAATGTTTTAGGAAGAGGTGGATTTGGCACAGTTTATAAAGGAGAGCTTCATGATGGAACTAAAATTGCTGTGAAAAGAATGGAGTCAGGAGTAATGGGGTCGAAAGGGTTGACTGAGTTCACTTCGGAGATTGCAGTTTTGACTAAAGTTAGACATAGAAATCTTGTATCGTTGCTTGGGTATTGCTTAGATGGAAATGAAAGGTTATTGGTTTATGAATACATGCCACAAGGGCCACTTAGCAGACATATATTTGAATGGAACGAAGAAGGATTGAAGCCGCTAGAGTGGAAAAAGCGACTTAGTATTGCATTAGATGTAGCTAGAGGAGTTGAGTATCTGCATAATTTGGCACATCAAAGTTTCATTCATAGAGATTTGAAGCCCTCCAATATTTTACTTGGAGATGATATGAAAGCTAAGGTAGCTGATTTTGGACTTGTTAGACTTGCACCTGATGGAAAATGCTGTTCTGTTGAGACTAGATTGGCTGGAACTTTTGGGTATCTTGCACCTGAATATGCAGTGACGGGTCGAGTAACAACCAAGGCGGACGTGTTCAGCTTTGGAGTGATACTAATGGAGCTGATAACGGGCCGCAAAGCCCTAGATGAAACCCAGCCCGAAGAAAGCGTGCATCTAGTGACATGGTTCCGCCGCATGCAACTAAACAACAGCAGCGATGAGAAAAGGCCGGTGCAGAAATCAATGATCGACCCAGCCCTGAACGTCGATCCAGAAGACGAGGAAACCCTAGCAAGCATAGGAACAGTATCGGAGCTAGCGGGCCACTGCTGCGCCCGTGAGCCAAACCAGCGGCCCGACATGGGCTATGCAGTAAACGTGCTGGCATCGCTGGCAGAGCTGTGGAAACCGTCAGATCCGGACTCGGAAGACAGTTACGGAATCGATTTGGATATGACTTTGCCTCAGGCTTTGAAAAAATGGCAAGGTATGGATGGTGCCACTTCTTCGTTTCTGGACACGGAAAATACACAGACGAGCATTCCGACTAGGCCTCCCGGATTTGCCGATTCATTCACTTCAGCCGATGGGAGATAG

Protein

Gene

>AfisC1G06972
CTTTCCCTATCACTACAACCCTGTAGATCCCTAGCTGGGTCCTACGCATGTGCCTCCCCATGTGGCCATTCTTTCGAAACCCCCCAAACCGCCCCTCTCCTTTTCTTCACGTTCAAACTCAAATCCATACTCAACAAAACTGACGGACCCAAACTTTAATCATTTAGAAAAAGAAATGAAAAAACCAATGGTGATGCTTCTGTTCTTGCTCTTCCTAAGCGGTAACTTCAACCAAGGAGAGGCAGACACCAACCCGAACGACGTCGCTGCAATGCAAGCCCTCTTAAAATCCATAAGCGGCGGTGAAGTTACCGCTTTAAAGTGGTCCCCGAAGACCGACCCGTGCACGTGGGAGCTGGTCACCTGCTACGACGGTCGCGTCACCGCCATCCAGGTCGGGAACAAGTCTCTCCACGGCGTCCTCCCCTCCTCTCTTGGCGAGCTCACCGCCCTCACCCGCCTCGAAGTCCAGAACAACTTCTTAAACGGCCCCTTGCCATCTTTTGGCGGTAACCTCACCGCGTTGCAAACTTTGCTTTTACACAATAACCAATTTACCGAGATGCCCCCCGATTTCTTCAAAGGAATGTCCTCTTTGGAAGCGGTGTATCTGGACGTCAACCCGTTTTCCCCGTGGCCGGTGCCTGACAGTTTGAAGGACTGCGAGTCTCTTGTGAACTTTTCTGCAAACTCGGCTAATATTACCGGAGCTGTACCAGACTTTTTCGGTAATACTTTTCCTAGCTTGGATCATTTAGGTTTAGCTTTTAATTCCTTAACGGGTCGGATCCCGAAGTCTTTTTTTGAATCCGGGATGAGGTCCTTGTGGGTTAATAACCAAAATGGTCCCGGTCTAGTAGGAGACATCACACCAGTTAGTGGCATGATTGAAGCTGAGGAGCTTTGGTTGCATTCCAATTCATTTTCAGGTCCATTACCGGATTTTTCAAATTTGACTAGCTTAAAAGACTTGCGGCTAAGAGACAACCAATTTACCGGAATAATTCCCAATAGTTTGCTGAGTTTAAAGAGTCTGGATATGGTTACACTAACAAATAACTTACTGCAGGGTGCTATTCCAAAATTTCCCAAAATTCGGGTATTGGATTTGGAACCGAAAAGCGAAAGCTTTTGTAGAGTTGAAGGTGGAGATTGTGATGCTAGGGTTAATGTGTTGCTTAATGTTGCGAAAAGTTTCTACTATCCTGTAAAATTTGCAGAGAATTGGAAAGGCAATGATCCTTGTAGTGGTTGGTTAGGTATTACTTGCGATGAAGGTGGTAATATTACAGTGATTAATTTTCAAAAATTGGGGTTGAATGGTTCAGTTCCATCCGAGCTGAGTTTGATTCCTTCAGTTAAGAGGATTTTGTTGGATGGAAATAATTTAACCGGGGTTATTCCAAAAGAGGTTACCGAGTTGCCAAATCTGAAAGAATTAGATTTGTCTAACAATAACTTATCAGGGGAAGTTCCTAGTTTTAGTAGGAATGTGTTAGTAAAGACTGATGGTAATCCTAACATTGGGAAAGACATAGTTACCCCTAAAAGTAGTTCGAGTTCAGGTTCAGGTTCTGATTCAGTTGATGTTGGTCCGAAATCAAGTTCATCTGGGAGTAGTAGCCATGGAAAATCTAAACTAGTGATCATTCTGTGTTCATTGTTGGGTAGTGTATGCTTAATCTCATTGCTATGTGCACTAGCTCTACTTTATTATAGGAGGAGGCAGAACTTTGCTCGTGTTCAAAGCCCGAACCGGACCGTGATCCACCCAAGGTATTCTGGATCGGACCCAGACGCTGTTAAGATCACAGTAACGGGTGAGGGTGCCAATGCAATTGGTTCAGCCACATCTGAAGCTTATAGCTTAGCGAGCAGCAACCGTAGTGATGTTCATGTGGTGGAAGCGGGCAACATGGTCATTTCAATACAAGTGCTACGAAACGTTACAAACAATTTTAGCGAAGAAAATGTTTTAGGAAGAGGTGGATTTGGCACAGTTTATAAAGGAGAGCTTCATGATGGAACTAAAATTGCTGTGAAAAGAATGGAGTCAGGAGTAATGGGGTCGAAAGGGTTGACTGAGTTCACTTCGGAGATTGCAGTTTTGACTAAAGTTAGACATAGAAATCTTGTATCGTTGCTTGGGTATTGCTTAGATGGAAATGAAAGGTTATTGGTTTATGAATACATGCCACAAGGGCCACTTAGCAGACATATATTTGAATGGAACGAAGAAGGATTGAAGCCGCTAGAGTGGAAAAAGCGACTTAGTATTGCATTAGATGTAGCTAGAGGAGTTGAGTATCTGCATAATTTGGCACATCAAAGTTTCATTCATAGAGATTTGAAGCCCTCCAATATTTTACTTGGAGATGATATGAAAGCTAAGGTAGCTGATTTTGGACTTGTTAGACTTGCACCTGATGGAAAATGCTGTTCTGTTGAGACTAGATTGGCTGGAACTTTTGGGTATCTTGCACCTGAATATGCAGGTAATTTAACTTTACCCACTGATCTTTAGTTTATATATTTTTCATATCATGATTATAGACTTAGAAATTCGGCAAAAAAATGTGTGGATATTGTTGAACTTGGGAGTCAAAACAGTTTTTATATATCTTACGTGTACAGATAGAAATAAAGCTCAAGAGAAATCTGTTCTTGAAAACTTATTTAAAGAAGTTGGTTAAAATTTAGGTTAATACAAACATGATCTGGACCAGTTTGGTAGTTGATCACGTGGGCTCACCTGATTCCTTAAAATAAGGTAGCAACATGCCATCATCAGAATAAGGTTAGTTTTAGTTGGTGTAGTAGATAGAATATTTGGTAAAACCATATCAAAGACTTCATTAGTTAAGGATACAATGGATATGATCTGAGCGCAACCTAAAAACTTCCGGTAATAGACTAATAGCCGGTTGTAGATATGAATATTGTTCAAGTTACAATTTTTTTTAGGTATTTCTAATTTATGACTAATTTTCCTGTTTAGAATATAGTAGCTGAAGGCAAACAAATTAATGATATATTGGTATAGTCCATAGTGGTTAAAATCAGTGATGCTTATTCTACTTGTTACTGAAATGCATTTTATTGATAAATCTTTGAAACGTTGATAAAATCTGGTCTTGAATTTTATTGTATTTTATCAACGTTTCAAATTTTGTTGTATTCTACTTGTTACTATAATGTCAAATTTTATTGTATTTTTTACTTTTGCATGTACGTTTTTTTTAAATCTATTATATTTTTTAGTTTTGTTGATCTAGTGAAATGGCTAAGTTTTCTTTCTGTACATTATTAAATATTACACATCCAAAAAAGGGAAGAAAAAATTGTGTTGCAAATATATTTATGAAGAGCTTAGGTATCGTCTTCTTTCTGTAGTTTTCGACAACTTAAGATGAATTTTGAGCTCTTCTTGAGCTATTATTATGTCAATACAGCAGTCATATATGAATAAAATGGCTACTACTATTAGTTTAGATGTCGTGCTTATTAATATTTGGTGCCTCCAAATTACAGTCTTGTGAATTTGAGCAAATTTGGCAACTGTTTTGGCCCTGTTATGTTATTTTGGCATATTAGACTAAAATACAGATAATACTGATACATGCTTCCCAAATAGAAACTTATATCAATCTTCTTATCTTGCAGTGACGGGTCGAGTAACAACCAAGGCGGACGTGTTCAGCTTTGGAGTGATACTAATGGAGCTGATAACGGGCCGCAAAGCCCTAGATGAAACCCAGCCCGAAGAAAGCGTGCATCTAGTGACATGGTTCCGCCGCATGCAACTAAACAACAGCAGCGATGAGAAAAGGCCGGTGCAGAAATCAATGATCGACCCAGCCCTGAACGTCGATCCAGAAGACGAGGAAACCCTAGCAAGCATAGGAACAGTATCGGAGCTAGCGGGCCACTGCTGCGCCCGTGAGCCAAACCAGCGGCCCGACATGGGCTATGCAGTAAACGTGCTGGCATCGCTGGCAGAGCTGTGGAAACCGTCAGATCCGGACTCGGAAGACAGTTACGGAATCGATTTGGATATGACTTTGCCTCAGGCTTTGAAAAAATGGCAAGGTATGGATGGTGCCACTTCTTCGTTTCTGGACACGGAAAATACACAGACGAGCATTCCGACTAGGCCTCCCGGATTTGCCGATTCATTCACTTCAGCCGATGGGAGATAGTAATTGAATTATCAATGCACGTGGTTTTTATTTTTTGGATTTGAATTGCTTGATGTAATATTATTTAACATCTTTTTACTAGATTTAGTTGTATTTTCTTTCTTTCTTTTCTTTGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020272462.1	0.0e+00	LOW QUALITY PROTEIN: receptor protein kinase TMK1-like
Swissprot	P43298.1	1.5e-222	Transmembrane kinase 1
trEMBL	A0A427B872	7.8e-298	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66150.1	58.05	0.0	1040	TMK1	transmembrane kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC1G06972	AT1G66150.1	944	359	17	22	951	22	942	58.05	1040
AfisC1G06972	AT2G01820.1	964	379	23	8	951	9	943	55.60	976
AfisC1G06972	AT1G24650.1	940	360	25	29	951	23	886	51.81	835

Ortholog group

Species	Genes
Allium cepa	g397914.t1; g397915.t1
Allium fistulosum	AfisC1G06972
Allium sativum	Asa7G02637.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	27	64	24.6	2e-05
PF13855.3	LRR_8	Repeat	92	150	28.3	9.6e-07
PF08263.9	LRRNT_2	Family	331	366	19.6	0.00073
PF00560.30	LRR_1	Repeat	418	437	13.1	0.099
PF00069.22	Pkinase	Domain	596	875	163.8	4.3e-48

Gene Ontology

Accession	Ontology	Name
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005794	C	Golgi apparatus
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009555	P	pollen development
GO:0009791	P	post-embryonic development
GO:0009941	C	chloroplast envelope
GO:0019901	F	protein kinase binding
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0051510	P	regulation of unidimensional cell growth
GO:0071323	P	cellular response to chitin
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K00924	E2.7.1.-; kinase	EC:2.7.1.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network