result

Gene information

Detail information of AfisC1G06986

Location

Gene	Chr	Start	End	Strand
AfisC1G06986	chr1	1268664055	1268665937	-

Sequences

CDS

Protein

Gene

>AfisC1G06986
ATGAATGGATCTCTTCATGAATATTTACATTTGTCAGATGATTATAGCAAGCCACTGAGTTGGGAAACTCGAATCAAGATTGCCCTCGGTACCGCTCGTGCTATCAAGTAAGTTTTACCTTGAAATCGATATATTCAACTTGGAAATGTCTCATTAAAGTAATTTTTTGAATTAATGCATGAGTATCAAAGCATATGCCTATTTTAATAATAATGAATAGTACATAATTATTTTATTTTCTGTTAGAGCTATCAATTATATATTCTCAATCTAAAAGAAAATCAATTCCAAAAAGAAACTGTGCCATTTTTTTAAATCATTTTGATCCTCTGGTTAACCACTTATGTGGCCCTGAATTTCATATTTTCATAAGCATTGTTGTCAAAAATCTTAAAATCTTACGATTTAAATCCTAATTCAGATCGGATCCCTCCCTTTTCGATTCGATTTACATTCCGATTCAAACCTAGTTAAATGCATGGTAAAAAAACACATCCAACTCATATTAACATATTTAATATACATATTTAGATCCACAATTCCCATTATAATGTTTTTAAAACAAAAAAATGAAATTAGAGAGAAAATTAAGTATTAAGTTTAATTGTAGACGTTCAGACATCAAAATCAACTTCAAAGTGCATACAAACATTAAAATATGAATATTTTAAATCTACGATTTACGATTTAAATCCCGTTTCGATTTAAAATTTAAACATTGCGATTTACAATTTAAATCCCATTTTGAAAACCTTGTTCATAAGTCTATGTCTATCTACTTGATTGTAACATATATGCCATGATCAGTATGCCGTATAAAACTCTGATTGTATTCCTTAGTTCATTGGCATTGGCATAGGCATATAAATAATCATATTCTTTTATTTAGTATAAAGCTATCAAGAATCATCGCCAACAATATGGAAGAACCAACTCGTTTTCAATTTTTAGATAAAAATATATATTGTGGTTGTCTTGGAAGTAATGCAGTTTATTATTCTATCAGATATTTATATTGTGGTTGTCTTGGAAGTAATGTTGTTTATTATTCTATCAGATATTTGCATGAGACCTGTTCCCCATCCATAGTTCACAAAAACATAAAGTCGGCTAACATTTTGCTTAATATCGAGCTCAACCCTCGCCTCTCTAATTGTGGATTAGCACCATATTATTACCTGCTATGTTGAATTTCTTTATGAGTATAGGATAATAGTATAATTATTTATGTAAAAAATATATTTATATTTCTCTATAAACACTATTTTGTTAGGGAAATAATTTAGGCCCTGGATACACTACTCCAGAATCTACCAACTCGTTGGAGCACACAACAAAAACCGATATATATTGTTTTGGTGTGGTCATGTTAGAGCTATTGACAGGTCGAATGCCATATGATAGGTAACTAAATTCATAAGCATATAACTGCATATAATAGTTTGAAACCATACATATATAGGTGGGACATTTGTGTACATGTAACTGTTGCTTTATAACAGCTCAAAACCAAGAACAGATCAAAATTTAGTTGCATGGGCCAAACCACGACTCCATGACAACGATGCACTAGCCCTAATGGCTGATCCAGCTCTCTGTGGGTTTTATCCTCAAAAATTGTTGTCCCGATTTGTGGATATTATCTCACAATGTGTTCAGGTAAATTACCGCACTAGTGACCGCTACCCGGTTATAAATTTGCATTTGCTATGATGTTTTAGTCATCTCTCAAATGTACGTTCTACCTCTTTATCATTATTTGGAATTGTTGATAATGATGTTGTTACTTCTTAATCATGCAGCCGGAACCTGGGTTTAGGCCTGCAATATCCGAGGTGGTGCAATCGTTAGTGCTGTGTACACCACGTATCGGTATTCGGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020581182.1	1.7e-72	protein STRUBBELIG-RECEPTOR FAMILY 5-like
Swissprot	Q6R2K1.1	6.1e-67	Leucine-rich repeat receptor kinase-like protein SRF5
trEMBL	A0A843V2F3	3.6e-72	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G78980.1	60.80	1e-68	255	SRF5	STRUBBELIG-receptor family 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06986	AT1G78980.1	199	74	1	2	196	484	682	60.80	1e-68	255
AfisC1G06986	AT3G13065.1	188	67	1	3	186	496	683	62.23	3e-66	247
AfisC1G06986	AT3G14350.1	187	63	2	2	181	499	685	62.57	9e-65	243

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	2	186	69.4	2.7e-19

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000902	P	cell morphogenesis
GO:0005576	C	extracellular region
GO:0005829	C	cytosol
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006468	P	protein phosphorylation
GO:0007623	P	circadian rhythm
GO:0009506	C	plasmodesma
GO:0009941	C	chloroplast envelope
GO:0010059	P	positive regulation of atrichoblast fate specification
GO:0010063	P	positive regulation of trichoblast fate specification
GO:0010071	P	root meristem specification
GO:0010183	P	pollen tube guidance
GO:0010305	P	leaf vascular tissue pattern formation
GO:0042127	P	regulation of cell proliferation
GO:0048366	P	leaf development
GO:0048481	P	plant ovule development
GO:0090404	C	pollen tube tip
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network