result

Gene information

Detail information of AfisC1G07068

Location

Gene	Chr	Start	End	Strand
AfisC1G07068	chr1	1283792225	1283794918	+

Sequences

CDS

Protein

Gene

>AfisC1G07068
TATAACAGTAGGTCTCTTCCACCTCTTCTTTAATTTCTCTTTTCTATTCTTCCTCTTCTTGTCTTCTTTTTCCAGTATTATTCTTCTATTCTAAAAAAGAAAAGAAAATATCAAATCAAATGAGAGCAACAACAGATCCGAGGTTTAGTTGAATCAAACATCATATCAAAGTGTTCCCTCCTTCTTCCTCCTATCAAATCAAATCCAAGTGTAAACAAAAATTGATTGAGCAACATAAGTGAAAACACAAAACAAAACCTAGCTAACAAAATAAAAATGTCATCTTCCTCATCAGAAATTTCTCTGGACAACTTTTCTCCTCCTCCACCGGAGCAACTTTGTTACGTTCACTGCAACTTCTGCAACACCGTTCTTGCGGTAATTAACAAAATATCACATCTCACTTAAATTTAAGTACACTATAGGCTCTATTCTACAGTTACTTCATTTGATGTATTGTATGATAATTAATGCAGGTGAGTGTTCCATGTAGTAGCTGGTTTAAGACAGTGACAGTGAGATGTGGTCACTGTACAAATCTCCTCTCCGTTAACACGACAACTGTGTTAACTCCTCCTCCTCCTCCTCCTCCTCCAGCTGCACCAAATCAGCTTCATCATTTCTTGCCTCCTTTTCTTAATCCCTCTGTACATAATTTTTTTTCTTAGCTTCTTCTTTGATTTGGATTTTTATTTTATTTTTCTTTCTTTTTTGTGCATTTGTTTTGATGCATATAATTAACTGGGTTTGGGTGAAATTGCATGCCAGCCTCCTCCAAGTTTGCTAGTAGATCCGGTGCCCAATCTACACTGCAGTAATGCAAAGCAACCTGTCGTGAAGTGGAATGAAGAAGAAAGGCCGCATATTAATACACCAACTATTAATCGACGTAAGTCTAATCTTTCTCTACTCTTTACTGTTAAGTTCTTGAAAACCTTTACGTTTATTTAATCTGTTTATATAGATTCATTTTATTATGCTTTGATTAATTTAATTTCTTGATCTGAGCAGCCCCGGaGAAGCGGCAAAGAGTTCCATCAGCTTATAATCGTTTCATCAAGTAAGTGGAAGTAACACTAGAATTTCTGGTGTAAATAAAGATATTACTGGAAGATTGAATTATTACAGCTTAATTTCATTTTGCAGGAATGAAATCCAACGTATCAAGGCAGCGAACCCAGACATCACACATAGGGAGGCTTTTAGTGCTGCCGCAAAGAACGTAAGATTTAAGGCTTAATTGATATCCTGAAATCAATTAGGGTTTACAAATTACAAAATTGGATTGGTCCTTTCACTCTCTTTAATTAGAATAAATAACCGGTAATAATAATGATTAAGTTACAAAATTGACAGTGGGCTCACTTTCCACACATCCAATATGGTATGATGCACGATCAAGTTTTGAAGAATAGCAGTATTCCCAACCAACAGGTAATTTTTACATACACTTCTTCCATTATTGTATTGTGTGTCCAATGTTTAATTAAAACTTGTTTATTTAAAAATAAATAAAAAGAACAGTGAATGAATCATTATGCTGTGTTAACGACGTTATAGGGAAAATGTGAATTTAAGCGTTCTCTTAAATCAATTTTTTTATTTTTTTTTTTATTTATTTTTGCTAATTCCAACAAAGTTATTCTACATAAATGACTTTTGGTTTGTTTGCTTTATTATTACTATTTTTCTTCTTCTTCTGAATTTATAAGCTAGATCTAGTTAAACTTATATCAGCAACATAATTAATTTTTTTTTGTTTTTGATTTAGTATATGTAGCTTCGATTCATATTTAAATGATTTTCAACCATTTCCAAGTTACAAGCATCTTCAGCAGAAAGCCCTAATTGTGTTTGCAAGTAATCCACCCACATCATTGCTTGTTCATAGACCTTTTTTTACATAAAAGTTTACAGACAAATATTCTCTAAGTTTACATCTCAATTTTTATAATGCACAGATATTGTGACATGTAACAAAATGCTTAATTAATTATGCTCCGATTTAATTGAGTTAAAGGAACATATATGTTCATTTACTATTGTTGTGTCAGTTTTTGAGAAAAAAAAGGCACCTGCAGGATTTATTCCTGCATCTTTCATTTAGCCAAAATGGAGCCTAGCAGTACCGTTGAATTAGATTGAATATTGCTTAATTAATATTCAGGTACAATGTAAATTATAATTAAATATTGCTTTAAGTTTTACAGAACTAACTAGTATTGGTACAGCTAGGTATCTTAAGCCCTAGTTCTGATTAAAGCTGCAGCCACCACCTCTATATTTAGATTTTGGACTTCGACTTTTTAGTGCTTTCAGCCTACGTATATTTCATAAAAATTGCTTTTCTTGGATATTTTCTTCCAATAAAATAGTACTTAGTTATTTTTTGGCAGGAGGGAGAAGATGCAATTTTCAAAGATGGGTTTTATGCAGCGGCAGCAGCAAAATTTGGGAGTCACACAGTTCTAGCCAATAATGAACTACTTAAATTTTAGTTAATTAATTACTGCCACTCAAAAATAAATTTGAGCATCTAAGACATTTCTTTTTCATGGAACTTCTTTTATTTTCTACTTATTTTCTGGTATAATCATCTGCTATATTGTTGATTTATAAAGTTTATTAATTTAGGATGTACCTTTGCTGTTTGTTACTTAACTTTATATTGACAGGTAATTATCTGCTTCTGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008787013.1	2.1e-61	protein YABBY 4-like
Swissprot	O22152.1	8.3e-47	Protein antherless
trEMBL	A0A8B7BWW4	1.5e-61	protein YABBY 4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G45190.1	54.05	2e-51	199	AFO;FIL;YAB1	Plant-specific transcription factor YABBY family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07068	AT2G45190.1	222	76	9	11	219	17	225	54.05	2e-51	199
AfisC1G07068	AT4G00180.1	224	83	6	11	215	17	233	51.34	2e-46	182
AfisC1G07068	AT1G08465.1	194	82	5	19	211	8	184	48.45	1e-42	169

Ortholog group

Species	Genes
Allium cepa	g293153.t1
Allium fistulosum	AfisC1G07068
Allium sativum	Asa7G02575.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04690.10	YABBY	Family	17	184	218.1	8.6e-65

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0009909	P	regulation of flower development
GO:0009933	P	meristem structural organization
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0010093	P	specification of floral organ identity
GO:0010154	P	fruit development
GO:0010158	P	abaxial cell fate specification
GO:0010450	P	inflorescence meristem growth
GO:0048833	P	specification of floral organ number
GO:1902183	P	regulation of shoot apical meristem development
GO:2000024	P	regulation of leaf development
GO:0090706

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network