result

Gene information

Detail information of AfisC1G07415

Location

Gene	Chr	Start	End	Strand
AfisC1G07415	chr1	1341041746	1341045084	-

Sequences

CDS

Protein

Gene

>AfisC1G07415
ATGGGGAGAGGAAAGATTGAAATTAACAGGATTGAAAACACAACAAATCGCCAAGTTACTTTCTGCAAAAGGAGGAATAGATTAATGAAAAAAGCTTATGAACTTTCTGTGCTTTGTGATGCCGAAGTTGCCTTAATTGTTTTTTCAAGCCAAGGCCGCCTTGACGAATACTTAAATTTGAACAGGTCAGTTTCTTAGTTATTCTTGATTTAGCTTAAGTTCTTCAACTTGTCTTATATATCTTTGATCTTTCATTACATCTCCTAGATCTAGCTTGTTGTATTCTACCTCTCCTTTTCTTTCTTTCTTTCTTTTCTTGAGTTTAGTTAAAAACTAACAATATCATGGTCGACAATTGCTATATTTTATGTTTTTCGGTGTATTTCTAGTAGTCTATATGTATGTTGTTTGAAACCAAATAACTAAAAGAACAAAAAGTTAAGTGCGGATCATGTTTGTTTCTTTTTATAAGATAGAAAAGTTTTTTTTCCTCTTCATATTTTAGCTATCTTTGTTTTTCAGTCGACTTATGACAGGCTTCTTTTAGTATATATTTTTCTTTTTAAATATGATTGATCGGTTCCATTTTCTTTGTTTCTTAAATTAACTGTTTTACTTTTACTTAATCCCAAATTCTTTGTTTATTTATTAATTTTGAAATTTATGCATGAAATTAATTATACACCAATTTTGGTTGAATTGTTTGTAGTTTTAATTAAACATAGAAATGTAAGGTTTCGTATATGATTAAAATGTATCAGATCCTTACAAGTATATGATTAAAATTATATTAAGTGTAATATGCGTGAAATGGTTGCTACAGCAGTACTATGAGCAAGAAGCTACAAAATTACGCCATCAGATTCAAATTTTAACTAATGCTAACAGTTTAATTTCGGTGATACAAAATCACAAATAGAAGGAAACAAATATGCAAAAAGGAAAGTAATCACATGTGTTCATTATGGAAATGCATAAAATTATTGGATTGCATTTGAATGAGATGGCAAGGAAATATATGCACGTGCACGTTATGCAATAATATATATGCAAAATGATATGCATATTATTTCTTTCTTCTTAATCGCATTGCTTTGGGATTATTTTCTTCCATCTTTGGAATGAGTGAATTACTTGCTATGTTTGCGTGATTTGTTACCATTGTAATTTGCCTCCATTATCTTCTTACCATATCTTGGTAATTTGATTGATGGCTCACATGAATTTACGTTGGTTATAAATTGAGGGTAGACTTAATTGTAAATCTATCATGGCATTCAGCCAGCGATCTCCAGATAGAGTGTCTCTTCATGTTAACCCTAATTTAGGGCTTTGGTATGTAAACTATTATCTTGTAATCTCTTGTAAATCTCTCATGTATAATAAAATCTCTCTCCTTTGGAGTGGACGTACACTACCTTGATAATAGTGGAACCAGTATAAATATTATGCATTCACTTTCTTCTTTAAAGTTATTTTCTATTTATTTGGAGTAATAGAATAATTGCTGCTAGATTAAGTGATGTTCAAATTGGCAAATCTAGATCATGTTTATTGTTTTTCCGCATTTGTGAAATTTTTGCACAACAGATTGGTATCGGAGCAAGGAAATTTGTTTAAGTTTATGCATCAATGGCTTCTAGAAAGAGCGGTAGATCCGGTGGTAATTATGCTATTACACATTTGGATGGAAAAAGGAGATTTTGTGCAATATGGAAGTTAAAGACGGAGGAGATTATGTTGAGAGAGAGGAGCGTTCTAGTCTTGGAAATTTGGTGATAAGGAGTTTACATTGTTGAAGGGACATCTAGATTTGGAAACCTGTATCTGATTCATGGCTCAATGTTGATGTGAGAGTCTTATGTTGATTTCCATTGGAAATTTGTTGTTTGGCAGATAAGGTATTTGGGAGGAGAGAGATTTTTCTTGCATACAGAGATTTGGATTAGCCTTGTTATGTCCATTGGCTTTTGTTTTTCTGGCTCTGTATTTGGATTGGTGATTGAGAGGATTTTTTGGCCTTGGTGGCTTTGAGATTATTTTGGTATCTACCTTCTTTTGATTTTGGATATTTGCAACATTTTGTTGGCGGGCGGAGGCATAGTCTGAGCTCATTAGCAAGGTGTGATGGGGGGTGGCCTTGCCAGAACCCATTAGGTAAATATTCATTTTTGGTTTGTATCTCGTTAAGAGATTTTGGTTGAAGGTGGAGTTCATTTTTAAGAGTTTTATGTTGAAAAGAGAATTTGACTCGAGGTGGAGTGTGGGAGATATGTGATTTTGCATCAAGGTGGAGTGTTAGATTTTGGTGATACAAAATCACAAATAGAAGGAAACAAATATGCAAAAAGGGAAGTAATCACATGTGTTCATTATGGAAATGCATAAGATTATTGGATTGCATTTTAATGAGATGGCAAGGAAATATATGCACGCGCACGTTATGGAATAATATATATGCAAAATGATATGCATATTATTTCTTTCTTCTTAATCACATTGCTTTGGGATTATTTTTTTCCATCTTTGGAATGAGTGAATACTTGCTATGTTTGTGTGATTTGTTACCATTGTAATTTGCCTCCATTATCTTCTTACCATATCTTGGTAATTTGATTGATGACTCACATGAATTTACATTGGTTATAAATTGAGGGTAGACTTAATTGTAAATCTATCCTGGCATTCAGCCAGCGATCTCCAGATAGAGTGTCTCTTCTTGTTAACCTTAATTTAGGGCTTTGGTATGTAAACTCTTATCTTGTAATCTCTTATAACTCTCTCATGTGTAATAAAATCTCTCTCCTTTGGACTGGATGCACACTACCTTGATGATAGTGGAACCAGTATAAATATTGTGCGTTCTCTTTCTTCTTTAAAGTATTTGCTATTTATTTGGAGTAATAGAATAATTGCTGCTAGATTAAGTGATGTTCAAATTGGAAAATCTAGATCCTGTTTATTGTTTTTCCGCATTTGTGCAATTTTTGCACAACACTAACAAGTAAGCTTAATTATGGCTAATGTTGAAATCATTTCATCTCAGCAAATATTTGTATTTACATACTATTTATTATATTCAAAATATAGACACTTAATGGGTGGCTCACTGAGTGCTTTAAGTCTCAAAGAACTCAAACAACTCGAGAACCGACTTGAAAGAGGGATTACTAGGATACGCTCGAAGAAGGTTAGCTACAATTTTGTTATTTTTTTTCCATTTTAAATATTTTATTAAAGTTTAAGTTATCAATGTTATATCATTTTGGTGTGATTCTAAATTATAAATTTTTCTATCAGCATGAGCAGTTGTTAATGGAGATTGAATACATAACATAG

Functional annotation

Database	accession number	e-value	annotation
nr	PPS02761.1	6.8e-39	hypothetical protein GOBAR_AA17900
Swissprot	A0A217EJJ0.1	5.2e-36	VviAG3
trEMBL	A0A2P5XHG5	4.9e-39	Agamous-like MADS-box protein AGL11

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G09960.1	56.29	3e-37	149	AGL11;STK	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07415	AT4G09960.1	151	19	1	1	104	1	151	56.29	3e-37	149
AfisC1G07415	AT4G09960.4	151	19	1	1	104	1	151	56.29	3e-37	149
AfisC1G07415	AT4G09960.3	151	19	1	1	104	27	177	56.29	3e-37	149

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	57	87.9	1.9e-25
PF01486.14	K-box	Family	59	105	48.5	6.9e-13

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0010048	P	vernalization response
GO:0010214	P	seed coat development
GO:0030154	P	cell differentiation
GO:0048283	P	indeterminate inflorescence morphogenesis
GO:0048481	P	plant ovule development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0080155	P	regulation of double fertilization forming a zygote and endosperm
GO:1903338	P	regulation of cell wall organization or biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network