result

Gene information

Detail information of AfisC1G07421

Location

Gene	Chr	Start	End	Strand
AfisC1G07421	chr1	1342639713	1342641048	-

Sequences

CDS

Protein

Gene

>AfisC1G07421
ATGGAGTTTGTTGAAGATGAGTACAACAATTACTGGGAAACAAAAAGATTTTACGATGAACTTGACAAGTAATTTCTACATTACTATTTTTTACTCATTTTAGTCTATGGGTTTCTTCATTTAATTCATCTTTTTAATTAATTCTATGTGCGCTTGATTTGTAGTTGGACTTTTGATGAAGAGATACTTTCGAGCTGCCATGAATCGAGCTCAACAGATTACAATGCACCATCGAGTTCAAGTCCTACAAAGAACATAGCAGAGATGCAAAGAAAAAGAAGAAAATTCGATGATAGTCTTTATGCACTCAGAAGTGTGGTTCCCAACATTTCTAAGGTATCACACAATACTTAAAACCCTCATTCTTAGCTATGTCAATAACTGTAACTTAATGACTATAGTAATTAAATAACAAATAATTTTATTTTATATTTGAAAATTAGATGGACAAAGCATCAATAATTAAGGACACAATTGATTATGTTCAAGAGCTTCAAAAGCAGGAGAGAAGTCTGAATGAGGAGATAGTTGCATTGGAATCAGCTCCAACTAGCGATGATAGCAGGAAGAGAAACAGAGAAACTTATTCAAGTTCACCCAAACTGTCTATTGAATTGATGGAGCTTAGCGTGTCTGATATCGGAGAAAACACATTCGTTGTAAGGTACAACTGCTCCATGAAATCGATGAAGAATGCATGTGAGATTTTTGAATCTTTGGATCTCCAGATTGTATCAGCTAACATTGTGTCTGAGTCCGGGAGCTTGCTGCACACCCTCTACGTTGAGGTACATTAGTAACCTTTTAGCAACTGATTTCCATTAGATATCTATAATAATAAATATTGTGAATCTATATATGTATTTCTCCTTTTAGTGGAGATAACTGTTTTCTGACTGTTGTATATTATATAAAAATTTCAGGTAAACGACATTGATTGCCTTCAATTGAAGCAGAAGATTGATGTTGCATTTTTAGAGTATGAGCTAGTAGAGTGCACATAAAGTATTCAGACGGATAGATTGTAGAATTACATAAACCGACGGATTCTTCTTCCCCTTTTCTTGCATCAACTGGCTTGATATTCACGATGATATTATTTGGTGTATCCAGATGATCAGAAAATGATATGCCTGGTCTCATCTTTTATGCAGAAAGATGGTTCTGCAGAATCAGTTGAACCATGAGTGACTTATTCAACCATCCCTTCTCAGGCACATTTCGCAATTTGTTTGTTGTATTAATATTCAATACCGAAAGTATTTCTAGGAATGCATGTATAATGCATCTGAATAAATGTAAACCCACCTTCTTCCCATTCTTCTTATTCAACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267843.1	5.7e-48	transcription factor bHLH35-like
Swissprot	Q2HIV9.1	1.6e-31	bHLH transcription factor bHLH035
trEMBL	A0A5P1EUS4	4.1e-48	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57150.1	39.32	3e-37	151		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07421	AT5G57150.1	234	119	5	2	215	3	233	39.32	3e-37	151
AfisC1G07421	AT5G57150.2	217	105	5	2	197	3	216	40.55	2e-35	145
AfisC1G07421	AT4G29930.2	227	121	6	1	220	1	221	40.97	2e-35	145

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	51	98	24.5	1.7e-05

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0010444	P	guard mother cell differentiation
GO:0050826	P	response to freezing
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0034756	P	regulation of iron ion transport
GO:0048657	P	anther wall tapetum cell differentiation
GO:0071281	P	cellular response to iron ion
GO:0071369	P	cellular response to ethylene stimulus
GO:0071732	P	cellular response to nitric oxide

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network