result

Gene information

Detail information of AfisC1G07523

Location

Gene	Chr	Start	End	Strand
AfisC1G07523	chr1	1362183466	1362187206	+

Sequences

CDS

Protein

Gene

>AfisC1G07523
GTGAAATATTAGCATGTGAACTGATAGAACAGAGGAGGACGTGAGAACCCCACAATATTGAAGGTTACTGAAATTCCTTACTGTCATATAAATACAGCATGGTGCATACCAGGATATCATATGTGTGATTTTGCTACAAAAGAATGAACATATCAAGTATAGCAAGATATGCAGTTTTAGCGGGGAGGTAAGAAAAGAAATAAACAAACACAATTCAAGCATGAATTCAACATTGTATACTAATTTTCCACTTGCATGCACAGGGAAATGAATGACATCATTTCTTCTAGAGGTAAATTCTAAAAGATTATTCTTACAAGGAGGTAATATACATTGCAAATCAGGGATTATGTTGTCAACTGATGCTAAGCCTAGGTTAAAATGGACAGTAGAACTGCACGAGCACTTTATCGAAGCAGTGAATCAACTTGGAGGGCCAAACGGTAAGCATCCAACTTACCACATGATTTTTTTACATAAAAAATGAAATAAATAGGAACAGAAAATAAAGTGAACTCTAGAAGCTAAAATTAGTGTTCATGTGCAGAGGCTACTCCAAAAACAGTCAGGAGGCTCATGGGCATTCCAGGTCTAACATTGTATCACCTTAAAAGTCATCTGCAGGTACAAAGTAATGATTTCTACACTGCCGTGTCTGTATATATACATGAGTGTGATTTATACATCGTTGCATATGTTATACGTGTTTATCTTCTGTGTTTGCATGTGTTGTGAGAGAGCCAAGAATTACAACAACCCCAGGCTACCCGGGAATTAGTCACTATCAGGACCAGCCCTAGATATAGGTTGTGCCCTAGATGAATGATCATATAAAACGGAAGCGTGAAGGATAAAAATAATACTTGTGCAATTTTGCGAGGTTGAATTTGTAACATATCTTAGAAAAACCTCAGCTGCAACCTAAACTTGTAAACCATTGGTAACTAGCTAATGGATTGTGACCTTTAGATTATCCGATTCGTCAATTTCTTCCTCACCTGATTCATATTCATCACATTCTTTGAATTCCAAATGGGAATTCTGTGTACTTATTTGATGTTGTTCTTAAGAGAACCATTCTTTCTCAGATGAGGAGGAAATATTATTCCTCCCATGAAGAAGCATTAGATTGTACGATTTTCACGGCAAACTACGTTTTAATTTTAAATTATGATGAAAAAGAAAGAACTTTCGAATTCTAAATTGTTGGGGCTAGGTTGCCAAAATGTCCATTTAGAAGTTTCAAATTGTTGACGCCGAATTCCATGGCAAACTAGGTTTTGGTTTCCAAGTATATAAAATGGAAAAGAAAGAACAGAGGGCCGATCTTTAAATTGCCAGGGACCTGTTCACAGAGAGTCTGTTTAGAAGTTTTAAATTATTAGGGCCTGGTTTCCAAGGAGTCCGTTTAAAATTTTCGCAAATTTGAACGCTTAACAAGCAAATTGTATTTACAAACATAAAATTCTTTTTGTACAACAAAAAGTTATTATTATTATTATTGACCAAAGGTAAGGCATACTAGTTTTTACTGAACCAACAGCAATTAGAAGGAAAAAATATACTCTTTAATTAAAATAATAACAACGGTTGTCTTATTTCTTTTCCACTTCTTCTGCTAAAATTAAAGCCCCTAAAAAATTAAGAAATTTTTAGAATATGCAACATGTTTTCTACTTCATCACCAGAAATGTAAAATTTTCAAATTCACGCTTACTTGCATAGTAAAAATAAAAACCTAGAGGACCATCAACGTGGTAAAAGTATATAACCTAGAAGACCACTTACGCTGTTAAAATAGGTTTTTAATAGTCAACATACGAGGTAAAATTTAAAACCAAAGTGAATGACTATGTGGAATACTATTTCAAACGATGATATAACAATGAAATTTGTGATAGAATATTCTAATTATATAAAGGGTGGATTGACTAAGGGGTTGCCTTCCCCAAGAGATCACCCTAACCAATGAGCTTGCTTGTCTTGCCGTTGGGTTGGGTCTGATCATTGTTTTCTTAATTGTTTCATTTGAAAAAAAAAAGGTTAACTTCATGGATGACTTGTACTAAGATTTCCAAATTTGCATCTAGAATAGAGACTAGGGTGAACTGCATAATTCTGCTCATGTGTATGTGTCTGTCTGGTTATTCATCATTTCATTTTACAGTGAAATTATTATTATGTTGTTTCCTTTCTTTCAGAAATATAGGCTTAGTAAAAATCTTCGAGTTCAATCAACTGCTAGCCCTACAAAAGACGGTAAGAAAATGAACCCAAAATTCATTATTCGAGGTTTCAAAACTGCTAGAAATTATATGGCACGTATTATTTTGCATCACAGTGGTAGGATGCACTTCAGCAGTGGATACTAAATATAATGTAGTTGAATCTACCAATGGAGACATAGGGATAGAAGCCAACAAGTAAGAGTACTTTAAAGAAGTTCCCAAATTGTTCTCATGGACTAAGCATGGCAATAAATATATTACTGAAAATAATTTACCTTTCAGATCTATGCAGATAAATGAAGCTCTTCTTATGCAAATGGAGGTTCAGAGAAAACTGAATGAACACCTAGAGGTAAGATCAACTTAAAAGAACTGGAAAGCAATTTATTCAGTACTGTAAAACTTTGAGCCTACTAAAAGATCTATGTTACCAGATCTCATTTGACGGTAGAAACGGAAATGGGATTCAAAGGACTATATTTTCTTCTGTTTAAACTGACAGCAAATCTGAAAAGTTGGAGCATGTAAAATGCTGCATTTTACTGCTCACAATAAAATAACCACTCTATGTACCTCAAACTAAAATGAAACTGATGTTTCAAGTTTGATCAATCCCTAAACTGTAAAAATCAACTATCACGCATTTTTAAGCAAACTATTATTCATTGAGCCACTAATGCAGGTACAGAGATGCTTACAAGTCCGAATGGAAGCTCAGGGAAAATATTTGCAATCAGTGCTGCAGAAAGCCCAAGAAAATCTTGAAAAACGAAATCTAGGTTTACCTAGTCTTGAAGCAACAAAAATTCGATTCTCTGAACTTGAAGCTAATGTAACAAATGCAAATCTTACGGATCAAACCATTGATGCAAAAGAAAATGCAAGTTTACAGAGAGAATTTAGCTATCTACCAGTATATTCAAGAAATCAAAGATTGAAAGAGCCTTCCATATTTTCAGACCAAATGCAAAATGATAGAAGTGGAGATTACAGCTATTTTGACCAACTAATTAGTAAAAGGCGAGCACAACTAAATTCAGATGGGGATATATGCTCAAAAGCACCACATCTCGATCTTAATGCATATGATGCCAATAATTCTGGCCCAAGTTGCAAACAGTTTGACTTAAATGGTTTCAATCGGGATTGAAAAATTGCATTTTGTTCGTTAGTAGGTTCTGTACGACCTGAATGTTATTCAAGAGATGGCTATAGTGCAGTTTGTAACAGCAAGTTTGAGAATACAGTTCACCAAGGTGGAAGAGAATTTTTGAAAATTGGGTGGAAAATATCTATGAGTATTCTAAAATATTCTGGAAGACGTCATTACTAAGAAATATATCATGACCTGATCAAAATAGACAAATTGGATACAAACCTAAGTATAGTAACTAGAATTCTATGTATGGAAGTTTAACCCAAGGTTCGAAATCTCAGTTTCGATTTTTGTAATTTAAGGAATTTCAATCCCATCCATAAAATTCGGGAATTTTGGTCCAAGTTTCGATTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	CAB3496070.1	9.0e-52	unnamed protein product
Swissprot	Q9SQQ9.1	2.0e-40	Protein PHR1-LIKE 9
trEMBL	A0A6V7NFW2	5.5e-51	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G04030.3	52.54	1e-58	223	MYR2	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07523	AT3G04030.3	236	104	3	1	230	13	246	52.54	1e-58	223
AfisC1G07523	AT3G04030.2	236	104	4	1	230	13	245	52.12	1e-56	217
AfisC1G07523	AT5G18240.4	207	88	2	1	205	13	218	56.04	4e-56	215

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	35	86	35.3	8.4e-09
PF14379.3	Myb_CC_LHEQLE	Family	132	178	75.4	1.8e-21

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003913	F	DNA photolyase activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009555	P	pollen development
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009650	P	UV protection
GO:0010628	P	positive regulation of gene expression
GO:0016036	P	cellular response to phosphate starvation
GO:0043565	F	sequence-specific DNA binding
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network