result

Gene information

Detail information of AfisC1G07537

Location

Gene	Chr	Start	End	Strand
AfisC1G07537	chr1	1367791151	1367793619	-

Sequences

CDS

Protein

Gene

>AfisC1G07537
ATGTATCAGGTCATCAAACATATCACTGCCATGGGGAGAGGAAAGATTGAAATTAACAGGATTGAAAACACAACAAATTGCCAGGTTACTTTCTGCAAAAGGAGGAACGGATTAATGAAAAAAGCTTATGAACTTTCTGTGCTTTGTGATGCTGAAATTGCCTTAATTGTTTTTTCAAGTCGAGGCCGCCTCGATGAATACTCAAATTTGAACAGGTCATTTTCTTAGTTATTCTTGATTTAGCTTAAGTTCTTCAACTTGTCTTATATATCTTTGATCTTTCATTACATCTCCTAGATCTAGCTTGTTGTATTCTACACCTCCTTTTCTTTCTTTCTTTTCTTGAATTTAGTTAAAAACTAAAAAGACCAAGGTCGACAATTGCTATATTCTATGTTTTTTGTGTATTTCCAGTAGTCTATATGTATGTTGTATGAAACCAAATAACTAAAAGAACAAAAAGTTATGTGCAAATCACGTTTGTTTCTTTTTATAAGATAGAAAAGTTTTTTTCCTCTTCATATTTTAGCTATCTTTGTTTTTCACTCGACTTATGACAGGCTTCTTTTAGTGTATATTTTTCTTTTTAAATATGACTGATCGGTTCCATTTTTTTGTTTCTTAAATTAACTGTTTTACTTGATCCCAAATTCTTTGTTTATTTATTAATTTTGAAATTTATGCATGAAATTAATTATACACCAATTTTGGTTGAACTGTTTATAGTTTTAATTAAACATACTATGTAAGGTTTCATATATGATTAAAATGTATCAGATCCTTGCAAGTATATGATTAAAATTATATTAAGTGTAATATGCGTGAAATGGTTGCTACAACAATACTGTGAGCACGAAGTTGCAAAATTACGCCATCAGATTCAAATTTTAACTAATGCTAACAAGTAAGCTTAATTATGGCTAATGTTGAAAGCATTTCATCTCAGCAAATATTTTTATTTATATACTATTTATTATATTCAAAATATAGACACTTAATGGGTGACTTACTGAGTGCTTTAAGTCTCAAAGAACTCAAACAACTCGAGAACCGACTTGAAAGAGGCATTACTAGGATATGCTCGAAGAAGGTTAGCTACAATTTTGTTATTTTTTTTCCATTTTAAATTAAGTTATCAATGTTATATCATTTTGGTGTTATTCTAAATTATAAATTTTCCTATCAGCATGAGCAATTATTAATGGAGATTGAATACATAACATAATTATTCCTTTTAAAAGTTAGTTAACTTGGTTCAATTTTAATAAATTATAGTTAACTTTCAAAAACTTAGTTTTTGTTAAGTTTAATTAATTTTTACAAAACTTATTTATAATAGTTAGTTTTATATATGGCATTTATAGCATGTAGTGTTAGAAGAACATGGCGTTGTACACTGAATTTAACGAAGGATTACAATGTTCAAGTTTAGAAAATTATAAATCAGTAAACTTCTAAGGTAAGTAAGGAAAAATGTAGCTATTGGCAATATGAGTTGCACCACTGTGGGAAAAAAACATGTTTTGACAAATTGACAACAAACAGGAATAGCGAGATGGTCTGAAATCATGTTAAAATAAAATTTATCATAGATTGAAAACTATATGTTATATAAAATGCATAAATAATCATATAATATTACCTCCTCTTGTTGTAGTTTGGAACAAAGCTTGCATCCATATTCCACCTTCACGGCATACTAGGTACATATCAATATTAAGATGCAAATAAACATAAAAGATATTTATACAATAAATTTGTAGCTAAAAAGAAAGTCGAATAAGGGCATACTACATGCATAATACATGCCCATGAGAACTGAAACATTAAATCATAAGGGCATACTTGATAACGAAGATAAATCAATGTCAACATGTATAGTTAACAAAAATTTGCAAGACGACTTTTGACCAAACCAAATCATATAAGGAAAATCATGTTAAAATAAAATTTAACATCATAGATTAAAAACTATGTGTTATATAAAATGCATAAACAATCATGTAATATTACCTCGTCTCTTGTTGTGTATGGTTTGAAACTAAGCTTGCATCCATATTCCACCAACAGAGCCTGCCAAGTACATATCAAAGTTGAGATGTAAATAAAATTAAAAAAAGTCATGTATTAGTTTCTGAAATTAATAATGTCTTATGTACTTATACTGTGATGCTATTGTTTACACTATGATGCTAATCATCATTTTGCTGCGACTATGCTGCTACATTCCTCAATATGCATTTAAGTTTATTGCAACGATTGCAGTTTTCCAGTCCCACTTCTTTATTCTCAGACTCTACCGCAATACATCATTGTGTTCATGTATAGCTTCAGCCTCTGTACTATATATTTATGCCAAATAGCATCAACTCAATTTATGTCACTGAGCTACAGTTACACAGCTTATCATCGTCTGCATTCTCATATTCTGTGATGCACTACATGTCCATATTTTGCGATAAAGTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	PKA65030.1	7.6e-36	KH domain-containing protein
Swissprot	A0A217EJJ0.1	1.3e-32	VviAG3
trEMBL	A0A0B2QLC4	5.5e-36	Agamous-like MADS-box protein AGL11

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G09960.4	49.09	3e-34	140	AGL11;STK	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07537	AT4G09960.4	165	36	2	11	128	1	164	49.09	3e-34	140
AfisC1G07537	AT4G09960.1	146	21	1	11	109	1	146	53.42	1e-33	138
AfisC1G07537	AT4G09960.2	142	18	1	11	105	1	142	54.23	1e-33	138

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	20	67	84.0	3.1e-24
PF01486.14	K-box	Family	64	107	40.1	2.8e-10

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0046983	F	protein dimerization activity
GO:0010214	P	seed coat development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048283	P	indeterminate inflorescence morphogenesis
GO:0048481	P	plant ovule development
GO:0080155	P	regulation of double fertilization forming a zygote and endosperm
GO:1903338	P	regulation of cell wall organization or biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network