result

Gene information

Detail information of AfisC1G07541

Location

Gene	Chr	Start	End	Strand
AfisC1G07541	chr1	1368189798	1368191798	+

Sequences

CDS

Protein

Gene

>AfisC1G07541
TCGATACTCATCCAAGGACCTATGCGCAACATAACCGGGTCCCCACACAGTTCAAAAACTGCTCTAAATTCAATGTTTGAACCGTTTTATAAAGTCGGCTAACTACAAATTTGACCTATGCTTCTAGCCTACCTTTCCACACCATAAAAAAGCCCGTGCGAAATTTCCAGGCACCCACATTTTCCAGCCCCCTTTCTCCCACGTGTGGTCCACTCGTCCCCACACGTGCGAACTTATCAACCTATTTATTCATCCATTTTCTTCTTCCTTCCCATCTCCACTTAAATCAAAGCAAGTCCCTAGAAATAAATTAGCTAAAATCATTCAACACGCAATGGGAAGAAGAACAAGAGACGCAGAAGCAGAATTAAACCTGCCGCCAGGGTTCAGATTCCATCCTACCGACGAAGAACTCGTCGTCCATTACCTCTGCAAAAAAGTCACATTCCAGCGCCTACCCGTTCCGATAATCGCTGAAGTTGATCTGTACAAGTTCGATCCGTGGGAGCTTCCCGGTAAGTGATTACCCTTATTTCATTCTCGAAATCCTTAGTTTGTACCAATCTTATGAGTGGCGATTTTGATTGCAGAGAAGGCATTATTTGGGCAGAAGGAATGGTACTTCTTCACTCCGAGGGATCGGAAGTACCCTAACGGATCCAGGCCGAATCGGGCTGCGGGTCGTGGATACTGGAAAGCGACGGGTGCGGACAAACCCGTTTCGCCATCCGGATCCAAAAAGGCCCTGGGGATTAAGAAGGCTTTGGTGTTTTACTCAGGTAAAGCGCCTAGAGGAATCAAGACTGACTGGATCATGCACGAGTACAGACTTGCTGATGCTAATCGCACTCCTGCTAATAAAAAAGGCGGCAGTTTAAGAGTACGTATTTGAATCAGACCTGTGTTGTTTAGAAATTGGATGAAATTGTTGCTAAATAGTCTAAATTGTATTTTATTTTCTTCAGTTGGATGATTGGGTACTGTGCAGACTGTACAACAAGAAGAACAACTGGGACATGACTCAGAATCTGAAAGAGCAATCTTCATCCTTCGGTGAAACAATAGACATGGATTCAGTAGATGATGATTTCAAGTCGGATATAGACAACGATTCATTTCAGGAGTTTGAAGATTTAAGAAAGCCTCAGATAATGCAGAATCAAAGCGTGATGGTGAATGAACAGCCGCAGCAAATGAAGAAGGAAGACAGTGATTGGTACATGGATTTGAATCTTGATGATTTACAGAGCACTTTTGGGGATTTTGGATCTTCAGCTACTGGACTTGATATGTCGAATTCGGATTATTTCTTGAATTTGCTTGGGTCGCCGATGGGGAAGATGGGACAAGGTACTTTGCCCCCATTTTAATCGCAGAGTTTGATGTATAGGTAGATAAAATATATGTATGTGGATAGCGTATGTAAAGAGAATGTAGTGTTGAAGAGGTAGAAATATTGTAAGAGTTTTTCAACATTCTTTTGGTAAATTCAATCCATTTATTTATCCATGAAGTATGACTCGTCAGTAAATGCAGCATGAATCAATTAACAATTCAGTGTTCATGTGTGTTGTTTTTAAAGGTTAATTATGAAATGTATTGCAAGTACAGAGGTTGGACATGATTCGAAATTAAAAAAAAATCGTGAAAAAGGAAAAAAAGAAAAGAAAAGTTGAAAGGAGTGCAAATTGAGGATTCGGTGCCAAAAAAGATATGATGCAGGCAAGTAGATAGCTATGCCAGCAGGGGGTTGGTGGCACTGTTTTCATAACCGGACCGGACCGGCGGTCCAACCGCGAAAACCTCAAACCGAAAGGCAATCCGGCCCGGAGTGCAAAAGAACCACATTTTCCATTCAGCCGTGAAAGCCGCGGTTCAACCATAAAAAACCGGATTTTTTGTCAAATAAAACCGAGTTTTTATCAAATAAAACCAAACCTATTAAATTTTTTAAATTTTCAGCGAGCCATAAACAAATAGTAGCCCAATAAAGCACCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020254522.1	1.2e-125	LOW QUALITY PROTEIN: NAC domain-containing protein 68-like
Swissprot	Q52QH4.1	4.5e-90	OsNAC4
trEMBL	A0A4P6JBI5	3.7e-113	NAC1 protein (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G08790.1	50.52	3e-71	265	anac081;ATAF2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07541	AT5G08790.1	291	107	7	9	282	2	272	50.52	3e-71	265
AfisC1G07541	AT5G63790.1	162	41	1	9	170	45	203	72.84	6e-70	261
AfisC1G07541	AT1G01720.1	159	35	2	12	170	5	159	75.47	9e-70	260

Ortholog group

Species	Genes
Allium cepa	g295809.t1
Allium fistulosum	AfisC1G07541
Allium sativum	Asa7G06217.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g60020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	15	141	93.6	9e-27

Gene Ontology

Accession	Ontology	Name
GO:0016021	C	integral component of membrane
GO:0001666	P	response to hypoxia
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0008361	P	regulation of cell size
GO:0009414	P	response to water deprivation
GO:0009507	C	chloroplast
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009644	P	response to high light intensity
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009962	P	regulation of flavonoid biosynthetic process
GO:0010029	P	regulation of seed germination
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043424	F	protein histidine kinase binding
GO:0043565	F	sequence-specific DNA binding
GO:0045995	P	regulation of embryonic development
GO:0046982	F	protein heterodimerization activity
GO:0048317	P	seed morphogenesis
GO:0048527	P	lateral root development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0080060	P	integument development
GO:0090400	P	stress-induced premature senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network