result

Gene information

Detail information of AfisC1G07549

Location

Gene	Chr	Start	End	Strand
AfisC1G07549	chr1	1369003648	1369005820	+

Sequences

CDS

Protein

Gene

>AfisC1G07549
ATGAAAGAGAGACGGAAGATGCAAGTTATTGATCTTTCTCTTAATTTGCATGAGACAAACGAAGATGAAAATAGAGATGACGACGATAGAGAGTTGATGAAGAAAGAAGAGGAGAGCTGTACTGAAAAATTCATGCAGGCGGAAATAAATCGAATGAAGGAAGAAAATATGCAACTTAGAAAGGAGATTGAACGTGCCACGAATGATTACAACGATTTGCAGATGAAAATCGTAGCGATTCAGGAACAAAAGCAAACAAAGGTATGCATATATAGTTATGAGCACTCAATTATCATTATAATAACTATATGTTATATTAATCTTTTTGCAACTTATTAGGATTATACACTTTCGTTACATGGAAAGCATAGGCATGAAGAAGATGACCAAATTCAGAATACCAGCTTTGAGCTTGGCTTGTCCCTAGGAATGAATATTCATCAGGATAAAAATGAAGCCAAGGAACAAGATGAAGAAAAGGGAGTTATGGACAGATGGGTAACAAATGAAACAGATATTAACATCAGGACTAAGCATGAATTTTCCGGGGTGTCCAGTACTCAAAGTATTAATCCAAATAATAGAAAACCTAGGGTTTCCATCAGAACAAGATGTCAAGATTCTACTGTAAGTTCTTTAAAACTAAATTGTTTGTTCAGTGTCAGCAATTTGAATAAACTGACATACATAAGCATACTACTACAAATACTGCAATGCAGTGCCTCTAAAAAAACATCTCATCCAAATTGTTGAGATGGAAAACTAGAGGTGCAAATTTATAATCCAACTACAACAAGGGATCTCTTGCTAATGATACAAAGTGCGCATGAGGGCCACAATGAGCTTACATGCCTACCCTGGGTCGAATAAAATTTTCAACATTGCAAATGATGAAACAGTTAATGATGTTTATTGTAGATGTCATAGTATGTTATTACATGCATAATAAATTATAGGTTAAATAATGCTTGATGATAAATGTGGATCATGTTTTACAGATGAATGATGGATGCCAGTGGAGGAAATATGGGCAAAAGGTATCAAAAGCAAATCCATGTCCACGGGCTTATTATCGGTGCACTGTTTCCCCTGGATGTCCAGTGAGAAAGCAGGTAAACTAAAGCATACTTAAAGAAGTTGATCGATCTTTTAACTTGTAAGTTTTTGTAATGAGTGCACACCGTTCAAACTTCAAAGCTTGATTTCACAATATATCGAACTGCAAATTTAGCTAGGAATAAAATGTAAGCATAAGAAAATGTATTATCTCTAGCTATCTATATATTATATCCTAGTCTACCTAAATTTTCATAATTTTCAGATGCAAGAAACAAACTAACTATGCATATCAAATTCTCTCTCGACATACAAAACACCAAGTTTTTCAGTATCAGCTGCTGATAATTAATATATACTTTTCACAACATTAATAATAAAACATCAGTATGAACTTTATAGCTTTGATGCACTGAACGAGCAATGTCTATTTATGCATTTATCTATTGAATCAAACATCGTGGAATTTAATGATATGCTGAAATAGAATGCTCAGTGCGACAAGCCCTATACTTTGTTTCACTTTCCATTTTGTACTAGTTTTACATTTCATACTATATCTGAATAGAATTTGCTCATGTTATTAAAAAAAAAAGTTTATAGACTTAAATCCTTATGTACGTACATTAAATACTAAGCAAGCCAAAATAATGTTTAGAGTGAAGTCTCAAACGAAACATGTGTGTACAGGTACAAAGATGCATGGAAGACATGTCAATACTTATAACAACATACGAAGGAAACCACAACCATCCATTGCCTGTAGGAGCAACTGCTCTGGCATCAACCGCCATATCAGCATCTCATGAAAATTATCCTCAAATGATGAATTCAACTTCTAACAATTACCTTAGCCAGTACTTAGTAAACCCAAATTCTCGTTCTTTATCGCATAATGATATCATAAATGCACCAAGCTCATCTATGCTGTTCAGATATCCTTGGCAGACAGATAATAACAGCCATTCGGAGAATTCATCGAGATAAAAAGCAAGTTGAAATCAAGAAATATATTGTTGTGAGTAGGTACGAGGTTCAGTTTCACTGCTGCAATTTATTTATTTTTGTTTGCGATCCATTTTATTTGTATATTAACTTCCATTTAAAGATTAATTCG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_034702209.1	8.7e-58	probable WRKY transcription factor 9
Swissprot	Q9C9F0.1	2.4e-44	WRKY DNA-binding protein 9
trEMBL	A0A3S4PNI8	1.8e-57	Putative WRKY transcription factor 9

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68150.1	40.56	3e-56	215	ATWRKY9;WRKY9	WRKY DNA-binding protein 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07549	AT1G68150.1	323	134	9	18	311	52	345	40.56	3e-56	215
AfisC1G07549	AT5G15130.1	296	121	10	13	259	20	301	37.84	3e-44	176
AfisC1G07549	AT4G04450.1	295	138	8	10	259	78	366	35.93	4e-44	175

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	185	243	90.8	4.7e-26

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002237	P	response to molecule of bacterial origin
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0009611	P	response to wounding
GO:0009685	P	gibberellin metabolic process
GO:0009751	P	response to salicylic acid
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0050691	P	regulation of defense response to virus by host
GO:0080169	P	cellular response to boron-containing substance deprivation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network