result

Gene information

Detail information of AfisC1G07570

Location

Gene	Chr	Start	End	Strand
AfisC1G07570	chr1	1371824943	1371826185	+

Sequences

CDS

Protein

Gene

>AfisC1G07570
CAAAACTTAAAAAAGAAAAACAACTCAAAAGGAAGCTTCGTTTTAAAACCCCTCCATTTCTTAAACCCTGAAAATTTCATGTGACTTTTTCTCAAAGATGATTCGGAAACTACAATCTCAGATGCCTTCTTCAAAATCCAAGCTCCGAACCAAAATAATCAGAATCTCCTTCTCAGACCCGTACGCCACAGACTCCGATTCCGATACGGAAGCTTCTCCATCTCGCCCCCGCATAAAAAAGCAATTGCACATAATAAACCTCCAACAACCTTGCACTGCTCTCGCGTCAGCACCCTCTAGCACTACAACCCCGCCGGTAGTCCGACGTAAGCCAGTCCATAAGCAGGCAGCGCCAAAGGCAGACTGGAAGAAGTTCCGTGGAGTTCGCCGGCGGCCGTGGGGCCGATACGCGGCGGAGATACGAGATCCGAACCAGAAGAAGAGGCTCTGGCTGGGTACTTTTGATACCGCGGAAGAAGCGGCTTTCGCATACGACCAATACGCTGTAAAACTGAAAGGGGATAAGGCAGTGACCAACTTCCCGTTACAATCAACGAAGGCAAAAGAGGAGAAAATGGAATCGGCGTTGGATTTGCCGTCACCGTCGCCGACGTCAGTGCTGAGGAGCGGGATGGAGCAGCCGTCACCGTTTGATGATTGGTTTTCTGGTGACGTGGATGTTTTGGGGATGAGTGTGGACTCTCCGTTATTTTTAACGAACGTCAGTTTTGGGTTCAATATTGAAAAGGAGGAACAGTTTAAGGAATTTGATCCAGCGGATTTTATGCTTGATAGTTTGGTGCCTTGCCTATAGCTAATCAGTAAGACAAAGTATCTTGCGAGTAAATTTTGATATTAAATTAAATTAATTAGTGGCTCGGTTTTGGCAGAGAGCTACTAGTAATTTATTTTTTGGATATTTTGCTTAATTAATTATATTTTATGGGAGAAATTTTTGGAGATTTTGTCAATGTGCGTGAAAGTTTTTGCTTGATATAGACGTTTGTAATCGTGTAAAGCTTGGAAAAAATGTAATAAATAGTGATCTTATAAAACTTTTTTTAAGTGTATCATTGCAAGACCAACTGGTTGACTTGAATCAAGTTAAATTAAAACCAGAAGAAAGGTTCAAATTTTAATGATTTGTATTTAATGAACAATAATACAAATTAGTAAGACATAAACGTCAACAACAAAGAGCTCTATTTGGCTTAAGTTTGAATCCATTGTGTAAGATAATTCT

Functional annotation

Database	accession number	e-value	annotation
nr	AXY87710.1	4.0e-39	ethylene-responsive transcription factor ERF-like protein
Swissprot	O04682.1	6.8e-28	PTO-interacting protein 6
trEMBL	A0A8J5FI91	1.3e-39	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G27950.1	43.97	1e-25	113	CRF4	cytokinin response factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07570	AT4G27950.1	141	66	4	19	151	41	176	43.97	1e-25	113
AfisC1G07570	AT4G11140.1	148	74	2	9	149	1	143	41.89	2e-24	109
AfisC1G07570	AT5G53290.1	147	69	3	19	150	37	182	42.18	5e-24	107

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	92	141	49.6	3.2e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0071497	P	cellular response to freezing

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13434	PTI6; pathogenesis-related genes transcriptional activator PTI6	EC:-	Plant-pathogen interaction	ko04626
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network