result

Gene information

Detail information of AfisC1G07797

Location

Gene	Chr	Start	End	Strand
AfisC1G07797	chr1	1411558890	1411561294	-

Sequences

CDS

Protein

Gene

>AfisC1G07797
ATGACTAACATTCCATACCACCAAAAAGTTAAAAGATGCAGCTACACTAGACTGCCTGAGGATTACCATCCTCCCAAGTCTCCAACAAGCTATCAGCTCGAATACAAGAAGCCAACAATACTGACAAGAAATTATCCGCTTGGCATCTACCCGATACTGGTAAGGAACCCGACCAACCTCTTAAGGCCTCTCTCAAATGCACAACACTCTGGCGGTCGCTCCTCTTACCATGCACAAAGCCTAACAACCATTGAAGATCTGATCCTTAAACAGCTAGCGTATAGTGTCTGACCAAAGCAATAATTGAGACACTCCCTCTAACACAAGCAGCTACTATATCAGCCCTTTTTGACTAGAGTGATGGCCAAGGACGCTGTTCTCCAATAGCTCATCCGCAACAACACACCCATAATCGTTTGGAATTGCGCATCTGAGCCATTCAGATGCCATCAATGATCACAGCAACAACAGAAGTGCAGGACTTTGATTTGGGCCATCCAGCTCATATCAAAGATAACCATATTAGAGCTACCCAACATGCAACATGAGCATCTATTAAGGGACCTCTCATTGATGGTCAAAGTGACTACTCTCTCCACGGAACCAAAAAGAGAACAACAAGCTCAAAACCTATTAAAAAAAGCCAAATTACCGTATTCGCGTCAATTCTTGTAATCAAACGTTACGCAATAAAAGGAGTAAATTCGCAGTGAACGTAGAACGAATTGAACAAAACACAATAAAATGTTGTCTTGTATTTTCTACTTATCTGCGTTAGCATAAGAATAATCACACATCAAACATATTCAATTTGCAAGGTGACCTTAGATCTATTCAAATCACAAACCATGTATAAGCATTTAAATGCTAACTTTAGACGGTGTTGTCTTTTTGAACACTAATAAATTCATTCTAAATTTCATATTTGTAGTTTAGATCAATTAATACTAAACTAAATACTAAAATTCTATTCGAAGTACATGAATTATCTGAAGCGTGAGCTTCGATTAATCTTCAATTAATCATTGCCCAGTTCGAGTAGCATTTTTACAAACTTCTGTGCATATTGTAAATTTATGGAATTGGCTTGATTTTATAGCGGGATCTCATATTATATTCACTCCAAATATTCTAAAATTTTGTTCGCATCTCTGTGAAGTTTCACAAGTCATTTGGCAATAAAGTATGATTGACTGCACGTGTGCGATATAACCATTTTGTCAGTCAATGAATGTAGCCGAATAGACAAAATAAATCAAGCACATATGATACACTGTTCAAAATCCATGTACAAGTTTCTATCATGGACCCACAATGACATCACACCACATTCTAATTTGTCCAACATCTTCCGCTACAAAACAAATCTTAGTCAAATATTACTCATTATTTTAGGTATCGTGCAATACTTTTTACGAAGAAGCTTCTTTTTTCCATGCCGCTATTAAGCTATCTTCTTCTACTACTTGTAAAAAATAATAATATTTATATTTAGATAAAAGGAAATCATCACATGTTTACTTCTCTACTTATAGGAAACAACATCAAATTACACATTAACAAAAGAAAAATCATCAATGTGTAATGAAAAGGTGAGAAATTTGGCTCCATTCTTGTCAAAGACATATAATTTACTAGAAAGCTCCCATGCTACACATATTGTGTCATGGAATGATGAAGGAACCAGCTTTGTTGTGTGGTTGCCTGATGAATTTTCGCAGTGCATACTGCCTCGCTATTTCAAGCATTCCAACTTTTCTAGCTTCGTACGCCAGCTCAACACTTATGTATGTGACTTTATCATATTTGTTCTAATTTTGAAAACGATCTCGAAGATCACACATTGCATCGTTAAGATTACTACTTTGTATTGCCAAAAGAATCATAGTTTGTTTCAAACTATATTTAGTTCATAACTTCTAAAGATGGTCAAGAGGTGGAGTATATGATTTGCTTTTGTTATGGTTGAGGCATGCATCTCTTGAAATTTATAAAAGATATGATGACAGATAGAAAGAATGATGTGATTTATTAAAATATATTTTTATTTTTTATTTGTTACTGCAATCACATAATATACGTGGCTTACTTCGTTATATCAGGGATTCAAAAAATCTACACCTGATCGCTGGGAGTTCCGGCACGATAAATTTCAGAGAGGGGGATTGCATTTGTTGACAGAAATAAGTAGAAGGAAATGCGTAGCCAGTGTTTTCCCCAGTTCTATGGATGCCAGACAGACCAGTTCTAACAGTGATGATGCTAACCAATCTAGTCTGGTAAAGCAAAACAAAGAATTGAGAAAAGAAAATGAAGAGCTGCAATCCCAGATCAATCAATATAAAGAACTCGAGAGGAAGCTACGAAGGATGGCTGAATCAATATGTATAGTCAGTGAAATGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248654.1	2.6e-43	heat stress transcription factor B-2a-like
Swissprot	Q9C635.1	1.1e-30	AtHsf-02
trEMBL	A0A5P1E6K8	1.9e-43	HSF_DOMAIN domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62020.1	45.90	7e-35	144	AT-HSFB2A;HSFB2A	heat shock transcription factor B2A

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07797	AT5G62020.1	183	68	5	77	232	22	200	45.90	7e-35	144
AfisC1G07797	AT4G36990.1	176	69	3	77	224	13	184	42.61	3e-34	141
AfisC1G07797	AT1G46264.1	94	35	0	77	170	33	126	62.77	2e-32	135

Ortholog group

Species	Genes
Allium cepa	g60709.t1
Allium fistulosum	AfisC1G07797
Allium sativum	Asa7G06422.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	79	168	107.5	3.6e-31

Gene Ontology

Accession	Ontology	Name
GO:0000302	P	response to reactive oxygen species
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0008356	P	asymmetric cell division
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network