result

Gene information

Detail information of AfisC1G07944

Location

Gene	Chr	Start	End	Strand
AfisC1G07944	chr1	1445113577	1445115377	-

Sequences

CDS

Protein

Gene

>AfisC1G07944
ATCTACTATTATTATAATATCATCGTAACAGAACTACAATCTGTACCTGAAGAAAAAAGATTATAAAATAAAATGGGAAGAGCTCCATGTTGTGACAAGGCAAATGTGAAGAAAGGGCCATGGTCACCTGAAGAAGATGCAAAGCTTAAACAATTTATTGAAGAACATGGCACCGGTGGCAATTGGATTTCTCTTCCTCAAAAAGCTGGTATATATATTTCTCTCTTCCATTTATACGTTTTAATGTCATACATGTTACTGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCATATGATGTATTTGATAATTAATAATATATAATTTGGAAATAAAGGTTTGAAGAGATGTGGAAAGAGCTGCAGACTGAGGTGGCTTAACTATTTAAGGCCAAACATAAAACATGGTCACTTTTCCGAAGACGAGGATACAATTATATGCAGCTTATATGCTAGTATTGGAAGCAGGTACTACAGCTCTATGTTTTATTTCTCTTTTCTTTTACAATTTATATTACTTCCACTTTTAGATATTAATTATTTTAGGAAATGCTGTTTCTGAATTGTACATAATTCTCCACATTTTGAGAAAACAAGGTCTATCGTTCTTACAAGTTTTCTGAAATGCAGATACAGTAACAAAAGAATATTTATTCATCTTACTTAAGCCAGATAAATATGTCATGAAGATTGAAAATTTGATAAGTTTGTATTTTTCAATTTTTTTTTCTTCTGAAAAGTAAAAAAATAAAAGCCCCTTATCCATCCTCCTTCTTCATCTTCTTCTTTTTCCTTTTTTCCTTGCATAAAATTTGTATTTATTCGAGCAAAAGTTTAACATTTAGTTGTACAATTAAGTTGTCAAAACACATTGTTTTAATCCACTGTAGTCAAAGAATAAAATAAACTGAAATTATGAATTTGGGTATCCATATGCGTTGTTAAGTCCATGTACAAGATCATGATTTACTAAGTGTATTACTCTCATACTTTCTTGATAAAAAAAAAATTTCCCTGACCATTTCTTGTCACAAAACCAATTTTGATTTATGATGAAATTGCAATATTTAAAACTTTGTGTATGTTGCCTATATTGTTATCATATACATCACAGGTGGTCCATTATAGCTTCTCAATTACCAGGCAGAACTGATAATGATATCAAAAACTACTGGAACACCAAACTTAAGAAAAAACTCTTAGGAGTTCCTCCTCATTCTCAAAGAAAATCTTCATCAAATCAAACCGATCGTCATCAAGAAACATTAATTATTTCAAATAATACTTCCCCGAATTATGCAATTGCAGCGTGTAGTAATCATTCTCAACATCATAGCCTGTCTTCGAACCTCGGATATGTTACACGTAGTTGTACTAATGATCATGATCAACCAATGTTTCATTGTACTAGTACTACTAATGCTAGTCTCTATCAAAACCCTAATTTCAACATTGATAATTATCAATTTGGGGCATACGATCAAAAGATGGTTAGCTGCAGCTCTTCAGACGTAAGTAACGAGGAAATTGAAAAGTTTAGTGAAAGCTATCTGTACGGAGGGCTTGAGGACCAAAATCATTTGCTTAATTATAATAGTAATTGGATAAACAATCCTGCAAGTTATATTTACAGTAGCACAAATGGTTCAAGCGGAGACATGAACTATGTATGATCATATCACTGTAAAAAAAATTGGGGGATAAAAGGAAGAAAAAGAATTGAGATTGGAAGTTTATTCTCCTTCCTACTTTTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_027063157.1	7.5e-66	transcription factor RAX2-like
Swissprot	Q9M2Y9.1	9.2e-61	Protein REGULATOR OF AXILLARY MERISTEMS 3
trEMBL	A0A6P6SCC2	5.4e-66	transcription factor RAX2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57620.1	82.95	1e-62	236	AtMYB36;MYB36	myb domain protein 36

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07944	AT5G57620.1	129	22	0	1	129	1	129	82.95	1e-62	236
AfisC1G07944	AT5G65790.1	142	28	2	1	142	1	136	76.06	4e-62	234
AfisC1G07944	AT3G49690.1	118	15	0	1	118	1	118	87.29	2e-61	232

Ortholog group

Species	Genes
Allium cepa	g10596.t1
Allium fistulosum	AfisC1G07944
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	62	57.7	8.5e-16
PF00249.28	Myb_DNA-binding	Domain	69	111	42.1	6.3e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008285	P	negative regulation of cell proliferation
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009785	P	blue light signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0035987	P	endodermal cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0045597	P	positive regulation of cell differentiation
GO:0048226	C	Casparian strip
GO:0048658	P	anther wall tapetum development
GO:0052545	P	callose localization
GO:0055046	P	microgametogenesis
GO:0080167	P	response to karrikin
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process
GO:2000021	P	regulation of ion homeostasis
GO:2000067	P	regulation of root morphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network