Gene information

Detail information of AfisC1G07960

Location

Gene	Chr	Start	End	Strand
AfisC1G07960	chr1	1448690102	1448691015	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_026457324.1	7.4e-47	transcription factor MYB61-like
Swissprot	Q8VZQ2.1	3.4e-44	Myb-related protein 61
trEMBL	A0A4Y7J4S0	5.4e-47	Transcription factor MYB61-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G01680.1	89.69	4e-48	186	AtMYB55;MYB55	myb domain protein 55

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07960	AT4G01680.1	97	10	4	100	18	114	89.69	4e-48	186
AfisC1G07960	AT4G01680.3	97	10	4	100	18	114	89.69	9e-48	185
AfisC1G07960	AT1G57560.1	115	29	4	118	18	132	74.78	6e-47	182

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	2	47	48.9	5e-13
PF00249.28	Myb_DNA-binding	Domain	53	96	50.0	2.1e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009901	P	anther dehiscence
GO:0009909	P	regulation of flower development
GO:0010089	P	xylem development
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network