result

Gene information

Detail information of AfisC1G07996

Location

Gene	Chr	Start	End	Strand
AfisC1G07996	chr1	1455517691	1455519503	-

Sequences

CDS

Protein

Gene

>AfisC1G07996
ATGGATAATGATGTTGATTCACAGGGAGTCAGAATCCATCAGATAGCCGGTGGTAATCCAGGCTCCAGCAATCTAAATTTCCGGCAGCTACCTCCACTAACATTTCTGGTGGTTTCTCCTATTTTCTTTTTATTTGTTTGGTTCTTTTGTTTTTCGAATATTATTTAGGTAGATATGTTTAGTTCATGTATTTAGTGTTCGAATCTCATAGCCTAATGCTTATTATTAATGATATTCCTTATTAGTATTATATATTAACCAATCTACTACCGGGTATAAAATTTCACATTCTGCAAGTAATTTTGTCTCTTCTGATGAAATTTTTATTCCACTAACATTCACAGTAATATTTTCAAAGATATCATTGATTCACATAATAACTCCATTGATGATTATATGCCTGCACAGAAACTCTAAATGCAGAACAAACAAGTTTAATGGATAATGATGTTGATTCCATTAATGACAAAGCATTAAACTCGAAGATGAAGGGGAAATCTTGCATTTTTTTTGAAGATAATCTTAATTATAACGGGGAAACTAATAAAAAAGGAAAAGACTAGCAATACTGCAAAATATGCCGCTTTGATAAATACAAGAGCACGATTAAAGGTTAATGGCTTTACTTAGTAGGAACTTAAGGGTTATGATTACTAAATTTAGAATAAGGGATGTATTCAGACTCCCTAATAAATACAAGCTAACTCTTTCTCAAAGCGAGAATATAGCCTAATGTTACTTCATATTCTACTACTATTACAATGCTTGGTTAAACTAGAAGCCTGACATGCTAGAAGGATTAGAATAAGAAGGATAGATGAATTCAGTAATTCACATAAAACTCTTTCATTTTGTTCTTCTTTTCATTATTTACAAACCATAAAAATTATTTCAATGATTTAATTTGGGATAATCGTATTAGTTTTTGTATAAAGGCTCTGGTTTACAATTGGCTTTAGGTATCAAAAGTCCTAGGACTGGCCATGCATGTATCTTCATTGTTTACTCTTATCAAATATTTCTTACATGCAATGTTATCCTCTGCTACTTACATAGATAAAGAGGGAGATTAAAATACCGCAAAATTTTTGTGGAGGCACATATTGTGAAGCTTCTCGATATTGTCCGGGATCAACATTTGAAACTCCTAGCTTTATATTTGAATATGTGAACAACACGAATTTTAAATTTTTATACCGAACTTTAACAGATTATGACACCCGCTACTACATTTATGAGCTTCTCAAGGTATTTTTCATTCTTCCATTTCATTATTTATGCAACTCGGTGCCTTTATGCTATACATGCATATATATATATATATATATATATATAACTTGCTAGTTTTGTATGTGAAATAAATCGAGAATATGGATACACAAATTTTGCTTTGGTGCTTCCAAATAGTTTAAAATAAACTATTTAATCGGTTCTATTAGGCATTGCTGATTTTGTTCCAAGTGGATATCTTTCTTGATGCATTAAACGGTTATGGTAATTAGGGCAAGTTTTAACCAAGCTATAATACATGTTAACTGTAGTGTTTCTATGTTTGTTTCTTCAATAATATATGATCCTTGGCTATGTTCTTATTTTTACTTTTGCATAATGTCATGCTTGTAATTTAACTTTTTCTATGAGTGTCGACATTTATTTAATCTTAATTTCTTCAATTTGATGATCCATCGCTCTTGTGTGTTTTATTTTGTAGGCATTAGGTTACCGCCACTCACAAGGAATCATGCATAGAGATGTCAAACCTCATAATGTTATGATTGATCATGAGCTTTTCAAACTGCGTCTAATAAACTAG

Functional annotation

Database	accession number	e-value	annotation
nr	PIA33182.1	1.0e-28	hypothetical protein AQUCO_04200145v1
Swissprot	B6F107.1	2.2e-31	Casein kinase II subunit alpha-2
trEMBL	A0A1D1XV07	5.7e-29	Casein kinase II subunit alpha

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G67380.2	69.39	2e-32	134	ATCKA1;CKA1	casein kinase alpha 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07996	AT5G67380.2	98	29	1	37	133	116	213	69.39	2e-32	134
AfisC1G07996	AT5G67380.1	90	27	1	45	133	157	246	68.89	4e-29	123
AfisC1G07996	AT3G50000.1	90	27	1	45	133	151	240	68.89	8e-29	122

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	68	129	53.6	1.8e-14

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001669	C	acrosomal vesicle
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0005956	C	protein kinase CK2 complex
GO:0006281	P	DNA repair
GO:0006325	P	chromatin organization
GO:0006351	P	transcription, DNA-templated
GO:0006468	P	protein phosphorylation
GO:0007623	P	circadian rhythm
GO:0008284	P	positive regulation of cell proliferation
GO:0009648	P	photoperiodism
GO:0010187	P	negative regulation of seed germination
GO:0010225	P	response to UV-C
GO:0010229	P	inflorescence development
GO:0010332	P	response to gamma radiation
GO:0051879	F	Hsp90 protein binding
GO:0016580	C	Sin3 complex
GO:0016581	C	NuRD complex
GO:0030177	P	positive regulation of Wnt signaling pathway
GO:0030307	P	positive regulation of cell growth
GO:0031519	C	PcG protein complex
GO:0043154	P	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045732	P	positive regulation of protein catabolic process
GO:0047485	F	protein N-terminus binding
GO:0061077	P	chaperone-mediated protein folding
GO:0071174	P	mitotic spindle checkpoint
GO:0071215	P	cellular response to abscisic acid stimulus
GO:1901796	P	regulation of signal transduction by p53 class mediator
GO:1903146	P	regulation of mitophagy
GO:1903955	P	positive regulation of protein targeting to mitochondrion
GO:2001020	P	regulation of response to DNA damage stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network