result

Gene information

Detail information of AfisC1G08112

Location

Gene	Chr	Start	End	Strand
AfisC1G08112	chr1	1482709337	1482709865	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_028762050.1	4.6e-19	NAC transcription factor 29-like
Swissprot	B5X570.1	3.8e-18	Protein NTM1-like 2
trEMBL	A0A834SWE0	2.1e-18	NAC transcription factor 29-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G69490.1	43.14	8e-21	95.9	ANAC029;ATNAP;NAP	NAC-like, activated by AP3/PI

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08112	AT1G69490.1	102	58	0	6	107	33	134	43.14	8e-21	95.9
AfisC1G08112	AT1G33060.2	105	55	2	10	111	52	155	43.81	2e-20	94.4
AfisC1G08112	AT1G33060.1	105	55	2	10	111	52	155	43.81	2e-20	94.4

Ortholog group

Species	Genes
Allium cepa	g45391.t1
Allium fistulosum	AfisC1G08112
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	23	107	30.8	3.7e-07

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000398	P	mRNA splicing, via spliceosome
GO:0002230	P	positive regulation of defense response to virus by host
GO:0002237	P	response to molecule of bacterial origin
GO:0003002	P	regionalization
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003713	F	transcription coactivator activity
GO:0050832	P	defense response to fungus
GO:0005829	C	cytosol
GO:0005516	F	calmodulin binding
GO:0005789	C	endoplasmic reticulum membrane
GO:0016032	P	viral process
GO:0009531	C	secondary cell wall
GO:0009611	P	response to wounding
GO:0009819	P	drought recovery
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009741	P	response to brassinosteroid
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009901	P	anther dehiscence
GO:0010029	P	regulation of seed germination
GO:0010200	P	response to chitin
GO:0010455	P	positive regulation of cell fate commitment
GO:0044212	F	transcription regulatory region DNA binding
GO:0010981	P	regulation of cell wall macromolecule metabolic process
GO:0015030	C	Cajal body
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045491	P	xylan metabolic process
GO:0046982	F	protein heterodimerization activity
GO:0048527	P	lateral root development
GO:0048759	P	xylem vessel member cell differentiation
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070301	P	cellular response to hydrogen peroxide
GO:0071365	P	cellular response to auxin stimulus
GO:0071470	P	cellular response to osmotic stress
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0090058	P	metaxylem development
GO:0090059	P	protoxylem development
GO:0090400	P	stress-induced premature senescence
GO:0097525	C	spliceosomal snRNP complex
GO:1900057	P	positive regulation of leaf senescence
GO:1900426	P	positive regulation of defense response to bacterium
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network