result

Gene information

Detail information of AfisC1G08158

Location

Gene	Chr	Start	End	Strand
AfisC1G08158	chr1	1491300061	1491303334	+

Sequences

CDS

>AfisC1G08158
ATGCTCGCTCTTTATCCAAACCCCGTTCCATTTCTTTCTCCTATCAGTTTTTCAAACAACTGCAACAATATTCATCGGCGTTTAAAATTGCTCAATGTCGCCAGCGTTTCATCGCCGCATTCAGGCCCTAGGATTCTCAAATCCAACCGAAGAAGAAACCCTAAAATCGCCACTTTGTCATCCTATGACGACGAAGATTCTGATGATGAATTCGACAAAGAAGAGGAGGAGGATGATGGTACGGATGAGAGTGATGGAGATTATTCTCGACTATCAGACAATGATGATTATTTAGACTTTGAAAAGGCTTGTGGCAGGAAAAACTCGATGGGAAAACAAACAACTCTTCATTCCAGCATTACAAATAAGCGACATCAAAATCTAAAGTCATCACAGAAGGACCAAAAAATTAGAACACTGGAAACAAACATTAAATTCGATATAGGAGAACAGAATGGAGCATTAACAGCAAGCGCACTCAGAAAACTCGCTGAAGAACTTGATTTTGATGAAAAATGGTTCCCTTTAATAAAGTACTTAAGTACATTTGGACTTAAGGAGTCTCATTTCACATCCATTTATGAACGTCATATGCCTTCCTTCCAAATTAACTTGACTTCTGCTCAAGAAAGAATAGAGTTTCTACTGAGTGTTGGTGTAAAGCGTGCAGATATAAAGAGGATACTTGTGAGGCAGCCACAGATTTTAGAATATACCGTCGAAAATAATCTAATGTCTCATGTTATATTCTTATTGGGCCTAGGGATTCCAGAAACTCGAATAGGACAGATAATTAGTGCTGCACCTTCTTTATTTTCGTACAGTGTGGAAAACTCTCTAAAACCCACAGTTCGATATTTGATTGAAGAAGTAGGTATTAAAAAGAGTGATGTTAGCAAAGTCGTGCAACTTAGCCCCCAAATTCTGGTACAGCGAATTGACAATTCATGGACTTCTCGCTTAACATTCTTATCAAATGAACTGGGAGCACCACGAGAGAATATAGTGAAGATGGTCACTAAACATCCTCAGCTTCTTCATTATAGTATAGAAGATGGAATATTGCCTAGAATTAACTTTCTCAGAAGCATTGGAATGAGAAATTCTGAAATTTTGAAAGTTTTGACAAGCCTTACGCAGGTTTTATCATTGTCATTGGAGGCGAATCTAAGGCCAAAATATCTGTATCTAGTAAATGAACTTCGTAATGAGGTGAAATCTTTAACCAAGTACCCCACATATTTAAGCTTGTCTTTAGATCAAAGGATACGACCACGCCATAGGTTTCTAGTATCCCTTAAAAAAGCTCCTAAAGGTCCATTTCCTTTGAGTTCATTTGTCCCAACCGATGAGAGTTTTTGTCAACAGTGGGCTGGGACAAGTTTGGATAAGTACATGGATTTTAAGAACAGGTTGTTGCTCAATGAATTTGCAAAGAAATATGAAAGGAAAAGATAG

Protein

Gene

>AfisC1G08158
AGAAATATTCTTCAGCGGCAATAATGCTCGCTCTTTATCCAAACCCCGTTCCATTTCTTTCTCCTATCAGTTTTTCAAACAACTGCAACAATATTCATCGGCGTTTAAAATTGCTCAATGTCGCCAGCGTTTCATCGCCGCATTCAGGCCCTAGGATTCTCAAATCCAACCGAAGAAGAAACCCTAAAATCGCCACTTTGTCATCCTATGACGACGAAGATTCTGATGATGAATTCGACAAAGAAGAGGAGGAGGATGATGGTACGGATGAGAGTGATGGAGATTATTCTCGACTATCAGACAATGTAAGCTTTTCGTTACAGCTCTTTTTATTCATGGAAGAATTTTTAGTTGATAAGATGGTTGTTATTAGTACTTGGCAAAAGCTGAATTTTGAGATGTATCGTCATTATGCAACACGGAAATAAAAAGGTACTTATTTGGTTCGAGAGTTTGAAACTTGAGAGTTAAGATGAAGCACTACAGAATATTCTTTACCTTTCTGTTAGTAACATAGAGAGCATAATAGCATTCGAGATAGCTATATTCTAATTACTAGCTACGTATATTAGTCAAAGACTACAGATTGACATTTGTAATGCCAAGTAGCTACCTTTAACTGTGAAGCAAGTCTCTTCTCACTTTTGCTTCTGCTATATATCATTAGTTTGCTTGAGGCCTATTACTTCCTTTTAATACCATTATCGTGGCATGCAGGATGATTATTTAGACTTTGAAAAGGCTTGTGGCAGGAAAAACTCGATGGGAAAACAAACAACTCTTCATTCCAGCATTACAAATAAGCGACATCGTAAGATTTATCCAACAATATACCTAAAAATCTTACATTAAATTACACTTAATTGTGTTCTGTTCAAATACAGAAAATCTAAAGTCATCACAGAAGGACCAAAAAATTAGAACACTGGAAACAAACATTAAATTCGATATAGGAGAACAGGTACGGTTTAAAACTCCATAGACATTGTTATTACCCTATGTGGATGCTAAATAGCTCTGTCAAAAAATAATTAAAGAACTCTGTTGGTTGCAAGTGAAGAATGGAGCATTAACAGCAAGCGCACTCAGAAAACTCGCTGAAGAACTTGATTTTGATGAAAAATGGTTCCCTTTAATAAAGTACTTAAGTACATTTGGACTTAAGGAGTCTCATTTCACATCCATTTATGAACGTCATATGCCTTCCTTCCAAATTAACTTGACTTCTGCTCAAGAAAGAATAGAGTTTCTACTGAGTGTTGGTGTAAAGCGTGCAGATATAAAGAGGATACTTGTGAGGCAGCCACAGATTTTAGAATATACCGTCGAAAATAATCTAATGTCTCATGTTATATTCTTATTGGGCCTAGGGATTCCAGAAACTCGAATAGGACAGATAATTAGTGCTGCACCTTCTTTATTTTCGTACAGTGTGGAAAACTCTCTAAAACCCACAGTTCGATATTTGATTGAAGAAGTAGGTATTAAAAAGAGTGATGTTAGCAAAGTCGTGCAACTTAGCCCCCAAATTCTGGTACAGCGAATTGACAATTCATGGACTTCTCGCTTAACATTCTTATCAAATGAACTGGGAGCACCACGAGAGAATATAGTGAAGATGGTCACTAAACATCCTCAGCTTCTTCATTATAGTATAGAAGATGGAATATTGCCTAGAATTAACTTTCTCAGAAGCATTGGAATGAGAAATTCTGAAATTTTGAAAGTTTTGACAAGCCTTACGCAGGTTAGTTCTTGATCTTCTCTCCCACCTTTATTTTTCCTTTTCTGGCTTCTGTTCTTGTTTTCTCTGCATATCTTGATTTGTCTCCTTTCAGTGCTTTAGTTTACAGTTTACATATAATTATTAGCCAATCATATTCCCACATTTGCATTTTTTGTTCCATTAAGACTGATTGATGAATGCATAAATGTCTGCATTGTTTCCTAAAGTGAAGGATATCTTACTAGGCAAATTATTAAATTGTCAGAAGTGGTGTGAGTCAAATTTCAAATTATGGGACCTGTTCTCAGAAGTTTAGAAACCTTTTTTTTTCCACGAAAAAGAGATTAGAAAAAATGCAATGTTAGACTTGTCAGTCTAGTTGTAGGATGTCAAGGATTTTGTACATTGAAAGGTTGGGTACAAGCAAGGGTTGCATTATAGCCTGTATGGCATAAAAATGAACGTTTGAAGGTAGCGTGCATTTTTCCTTTGGTTTGCCTTGGATAGTTTAAATTTTGATAATTTCTGAATCATTTTAATTACATGAACCAAACCATGTCATGATAGTTTAATTGGTCGTTTTCGACAATACACATGCGTCGTGTACCTTTTTGTATGGACGAAAACCCAAAACTAAAAATAACAAACCAAACACTACCTTAGCTTCTTGGATGATCAGAACATGCATGGAAATTAATAATTAGTGAATCCTAAATCATTTTTGCTTCTGCATTTGAAAACTAATAATGCTTGTAAACTTTCAGGTTTTATCATTGTCATTGGAGGCGAATCTAAGGCCAAAATATCTGTATCTAGTAAATGAACTTCGTAATGAGGTGAAATCTTTAACCAAGTACCCCACATATTTAAGCTTGTCTTTAGATCAAAGGATACGACCACGCCATAGGTTTCTAGTATCCCTTAAAAAAGCTCCTAAAGGTCCATTTCCTTTGAGTTCATTTGTCCCAACCGATGAGAGTTTTTGTCAACAGTGGGCTGGGACAAGTTTGGATAAGTACATGGATTTTAAGAACAGGTTGTTGCTCAATGAATTTGCAAAGAAATATGAAAGGAAAAGATAGAACTCATGGAGCTTTAAGCATCAAAATTTTGGTTTGACTTATAAGTAGTGTAAGTTGAAAGATACGTTATCTGCTGACATATTACTGTAGTTTTATTTGGCTGTAAAGTTTTGGATTCTGGTTTTTACCATCAAAAAGAGTTTTATATATTCCGATACAAAGAAGAAGCTGCTATTTGCAAGTTCATTGTTGTTGTTTTGTATACATGTAGTGGATGAGATTTTTATTTTCAGTTATAATCTTCATGTTTGTGTAATTATAAGATTTTGTATTTATACAGTGCATACAGATTTTGCCTACTTTATTGATGAAAATATGCAACTATAGGTTTCATATTGAATGCTTCCATTTCATGCTCTAGATTCCAAGCATATTTACCCATTAATCAATGTTTGTTAAAATGGCAGCAGTTTGTAGTTATTGATTTGGAGTGGTAATGTGCCATTTTTAATTTTTTTGCTATAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241704.1	5.2e-70	transcription termination factor MTERF9, chloroplastic
Swissprot	Q9FM80.1	8.3e-57	Protein TWIRT1
trEMBL	A0A5B6ZPX4	6.8e-64	Transcription termination factor MTERF9, chloroplastic

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G55580.1	76.16	1e-147	520		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08158	AT5G55580.1	323	77	0	162	484	173	495	76.16	1e-147	520
AfisC1G08158	AT1G78930.1	232	155	4	199	430	330	554	30.17	1e-24	111
AfisC1G08158	AT1G78930.1	198	130	6	176	370	374	560	27.27	2e-14	77.4

Ortholog group

Species	Genes
Allium cepa	g43762.t1; g440412.t1
Allium fistulosum	AfisC1G08158
Allium sativum	Asa7G01153.1; Asa7G01154.1; Asa7G06652.1; Asa7G06653.1
Arabidopsis thaliana	AT5G55580.1
Oryza sativa	LOC_Os07g39430.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	177	251	30.0	2.2e-07
PF02536.11	mTERF	Family	240	435	131.8	2.4e-38

Gene Ontology

Accession	Ontology	Name
GO:0003690	F	double-stranded DNA binding
GO:0006353	P	DNA-templated transcription, termination
GO:0003727	F	single-stranded RNA binding
GO:0005739	C	mitochondrion
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008380	P	RNA splicing
GO:0009507	C	chloroplast
GO:0009651	P	response to salt stress
GO:0009658	P	chloroplast organization
GO:0019843	F	rRNA binding
GO:0042255	P	ribosome assembly
GO:0048364	P	root development
GO:0048367	P	shoot system development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network