Gene information

Detail information of AfisC1G08240

Location

Gene	Chr	Start	End	Strand
AfisC1G08240	chr1	1506789585	1506790207	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010919768.1	4.7e-53	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6
Swissprot	Q8VZ17.2	4.6e-37	Suppressor of variegation 3-9 homolog protein 6
trEMBL	A0A6J0PHE2	3.4e-53	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G22740.1	50.00	3e-38	154	SDG23;SUVH6	SU(VAR)3-9 homolog 6

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08240	AT2G22740.1	162	78	3	18	177	630	790	50.00	3e-38	154
AfisC1G08240	AT2G22740.2	162	78	3	18	177	630	790	50.00	3e-38	154
AfisC1G08240	AT2G35160.1	161	58	3	18	177	661	794	46.58	3e-36	147

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00856.25	SET	Family	28	147	70.5	1.9e-19

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000790	C	nuclear chromatin
GO:0000792	C	heterochromatin
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0007265	P	Ras protein signal transduction
GO:0007275	P	multicellular organism development
GO:0010200	P	response to chitin
GO:0010216	P	maintenance of DNA methylation
GO:0018024	F	histone-lysine N-methyltransferase activity
GO:0018027	P	peptidyl-lysine dimethylation
GO:0033554	P	cellular response to stress
GO:0031048	P	chromatin silencing by small RNA
GO:0031667	P	response to nutrient levels
GO:0048511	P	rhythmic process
GO:0051567	P	histone H3-K9 methylation
GO:0090309	P	positive regulation of methylation-dependent chromatin silencing
GO:1990841	F	promoter-specific chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network