result

Gene information

Detail information of AfisC1G08244

Location

Gene	Chr	Start	End	Strand
AfisC1G08244	chr1	1507380060	1507382340	+

Sequences

CDS

>AfisC1G08244
ATGGGATGTTTTTGCTTCTTAATTAAAAAATTACTGAATAAACAAAAGGCAGTTCCGGTTTCAGAATCAACATCATGCCATACAACCAATTCAGCTTCTGATTCAGTATCCTCCTTTAGAAGCACACCGTATATATTCGAAGATAAAAGCAATAATTTGAGGGTTTTTGAGTACAAAGAGCTGAGAAATGCAACTAATGATTTCAACAGACTGCTTAAAATAGGTGAAGGTGGATTTGGATCTGTCTACAAAGGTCTGATCAATTCTCCAAATTCAAGAGGAGATCGTACTACGGTTGCAGTGAAGAAACTTGACCAGAATGGACTGCAGGGGCATAAACAGTGGCTAGCAGAAGTTCAATTTCTTGGAGTCTTAGAGCATCCGAATTTAGTAAAACTCATTGGATATTGTGCAGTGGATGATGAGAAAGGAGCGCAAAGGCTGTTAGTTTACGAGTATGTGCCTAACAAGAGTTTAGATGACCACTTGTTTAATCATACATGTCCAAGTCTGGAATGGAACACTAGGTTAGAGATTGCATTGGGTGCTGCTGAAGGCCTTGCATATCTACATGGACTTGAAGTTCAGGTAATATATCGTGATTTCAAGGCATCAAATGTTCTACTAGACAAGGATTTCAGGCCTAAACTATCCGACTTCGGATTGGCTAGGGAGGGGCCATTAGCAGGGGATACTCATGTTTCCACAGCGGTGATGGGAACTTACGGGTATGCTGCACCTGACTATATCGAGACAGGTCATCTAACGGACAAAAGCGATGTATGGAGTTTTGGTGTGGTTTTATATGAAATTCTCACAGGCAGGAAATCAATGGATAGAAATCGCCCTAGACATGAACAAAAGCTCTTGGATTGGGTGAAGCGTTATCCAGTGGAGAACATCAAATTTGGTAGAATCATGGATCCTAGGCTTCAAAATCTCTACTCTATGAAGGCAGCAAAAGAAATAGCAAAACTGGCAAACCGTTGCCTATCAAAACATGCAAGGGATAGACCAAAAATGAGTGAAGTGGTTGATGGTATAAAACATGCTATGCAGTACACGGAAATGGATGGTCATGCTCATGTGCTATATGAATGCGAGTTTGAGTTGGATGATGAAAATACAGAGGATAATAATGGAAGTTCTAAGAACAGTGAGTCAATGAAGAGGAGAATGCGTCATTTGTCTAAATTGAATGAGAGTGCAAATGATGTTGGAAGGAGAAGACTCTTCATGTTGTTGAAGATAAACGACTAA

Protein

Gene

>AfisC1G08244
GTTTTTGTTATTTTTTCAACACAACAACTACTGCAATTATATTTGCAGAATACAATATCAAGTTGCCATTTTTATATTCCTAGTACGTACCTGAGTTTCCATAAAAATATTGAATCAGTTGATTGATTCTCATATAGCTTCTAAACAACTGCATCCCAAACCTTAGTTTCAAGAAAGAAGAGTCGATAAAAAAATCCACAGAATGGGATGTTTTTGCTTCTTAATTAAAAAATTACTGAATAAACAAAAGGCAGTTCCGGTTTCAGAATCAACATCATGCCATACAACCAATTCAGCTTCTGATTCAGTATCCTCCTTTAGAAGCACACCGTATATATTCGAAGATAAAAGCAATAATTTGAGGGTTTTTGAGTACAAAGAGCTGAGAAATGCAACTAATGATTTCAACAGACTGCTTAAAATAGGTGAAGGTGGATTTGGATCTGTCTACAAAGGTCTGATCAATTCTCCAAATTCAAGAGGAGATCGTACTACGGTTGCAGTGAAGAAACTTGACCAGAATGGACTGCAGGTTTATCATTATATTTGATGATATTTGTAAAGTGTATTACTGTCAGTGTAAATTGAAATAGAAAATATGAAATTTAAACCAGGGGCATAAACAGTGGCTAGCAGAAGTTCAATTTCTTGGAGTCTTAGAGCATCCGAATTTAGTAAAACTCATTGGATATTGTGCAGTGGATGATGAGAAAGGAGCGCAAAGGCTGTTAGTTTACGAGTATGTGCCTAACAAGAGTTTAGATGACCACTTGTTTAATCATACATGTCCAAGTCTGGAATGGAACACTAGGTTAGAGATTGCATTGGGTGCTGCTGAAGGCCTTGCATATCTACATGGACTTGAAGTTCAGGTTTTCATTTTTATTACAAATGCTTCATATTCTATTTTTATTTGCTACAAATGTTTTAACATGCACATTGTACATACACTGATACACACGAATGAGTTGTTGATACTTTTTAGTTGAAGTAAAACGCATCGTTTATAATATGATGGAATCAGAAAATTGAAATGATGTATTTGTAATACTTGACTACATTTGAAGTGACAATCATGATTTAAAGAGTAACCAAAAAAAAAAAAGTTTTTTCATGCAGGTAATATATCGTGATTTCAAGGCATCAAATGTTCTACTAGACAAGGATTTCAGGCCTAAACTATCCGACTTCGGATTGGCTAGGGAGGGGCCATTAGCAGGGGATACTCATGTTTCCACAGCGGTAAATTTATATTCTGCAATATCTAGAATATCGATCATGTCTCAATAATTAGTAAAAGAAACTGATTGTACAAGGTTTAAATTTGTCTATTTAAAATGACAAAATGATCGTTTATGGTTTTTATTACTCTATCCAGTTCATGTTATTACGATTTATGTAGGTGATGTAAATATTTACAATGCCAAAAAAAAAAAAACCTTTATAATTTCTATTACTCTATCTAATTTATGTTATTACAACTTTTAATCGGATGGTTAAGACAAGCTATTTTCAATTCAAACATTACTGCTTACTTTTCAATGTGTTGTAAGCGAAATTTGTACATTTGTATTAATTTGAGAAAATTATAAATCATACAATGATAAATGATCAGGTGATGGGAACTTACGGGTATGCTGCACCTGACTATATCGAGACAGGTCATCTAACGGACAAAAGCGATGTATGGAGTTTTGGTGTGGTTTTATATGAAATTCTCACAGGCAGGAAATCAATGGATAGAAATCGCCCTAGACATGAACAAAAGCTCTTGGATTGGGTGAAGCGTTATCCAGTGGAGAACATCAAATTTGGTAGAATCATGGATCCTAGGCTTCAAAATCTCTACTCTATGAAGGCAGCAAAAGAAATAGCAAAACTGGCAAACCGTTGCCTATCAAAACATGCAAGGGATAGACCAAAAATGAGTGAAGTGGTTGATGGTATAAAACATGCTATGCAGTACACGGAAATGGATGGTCATGCTCATGTGCTATATGAATGCGAGTTTGAGTTGGATGATGAAAATACAGAGGATAATAATGGAAGTTCTAAGAACAGTGAGTCAATGAAGAGGAGAATGCGTCATTTGTCTAAATTGAATGAGAGTGCAAATGATGTTGGAAGGAGAAGACTCTTCATGTTGTTGAAGATAAACGACTAATTTCTTAATTTTATTATGACTATTTATTTATTTTGTTGAAAATGAATGAAGGAGCATTGATATTGCTGGTAATTAGGAGCTTCATTCACTTATCTTGATGATCAATTACAATGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017699195.1	5.0e-154	probable serine/threonine-protein kinase PBL19
Swissprot	Q9LTC0.1	3.2e-105	PBS1-like protein 19
trEMBL	A0A8B7MUL6	4.7e-154	probable serine/threonine-protein kinase PBL19 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47070.1	52.05	1e-108	390		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08244	AT5G47070.1	390	159	4	13	392	22	393	52.05	1e-108	390
AfisC1G08244	AT2G28940.2	341	131	5	21	345	44	384	56.89	4e-104	375
AfisC1G08244	AT4G17660.1	310	123	3	47	353	70	373	57.42	1e-102	370

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	73	346	165.1	1.7e-48

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0042742	P	defense response to bacterium
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0006468	P	protein phosphorylation
GO:0007166	P	cell surface receptor signaling pathway
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0052033	P	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response
GO:0080142	P	regulation of salicylic acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network