result

Gene information

Detail information of AfisC1G08305

Location

Gene	Chr	Start	End	Strand
AfisC1G08305	chr1	1517342187	1517346765	-

Sequences

CDS

Protein

Gene

>AfisC1G08305
AGAGGAAAACTTTTATGTGCTTTACAATTGTCCAACCATGTTTGTAGTGTGTCCATGGTTGAATTTCTAGATTCTTCCTTATTTTATTTATATCCGATCCTCCCTGGACTTTTCAAGAAAATGCATTTACTCCATAATATACATTTCGGATAATAAACAAAAACTATTTATTGCAATTGATGGAATGTGATCGCTGCAGCTCTAATCAATCCAGATATACACAAGGTATTCATCTTATATATCCATTGCCTAGGTATATATTTTTATTTATTATATATATACATATATGCATTCACACACACATACATAGATATATACATAAGTGTATGTATCTATTGATTTCTTATTCAACTTGGCTAGATCAACGAAAATTGAATGGTTCAAATAAAGCTAATGATGCTTGTTTTATGTCTGATTAAACATAACATATACTTAGATGAATCCTGAATCTAAGATGAGCACCTTTAAATTTTACCAAATGAGTAAAATGTAAAATTAATTAGTGATTTAACATCCGGTCCAAAGTGAAGAAATGATGTTATTTATCTTAAAAAAGATATAGCTCACATATGATGTCAGTAGCCCTATAGACTTCCAATAACAACAAGGATCAGACCCTCATCTACGCATAAAAGTTTATCTATTAAATTTGACTTAGCAGGCATGCAAAAGCTCTATAGACTTGTCATTTTAGCCCCCCACATAAACCATATCGTTTAGGATTTCTCTGCTGGCCTACAAATTGACAATAATACATGTAAACATGCATGTGTCGCATTTTATATACATACCATATCATCCTCCATGCAAGCTTGTTATCAATGATATATAAGGTATTATATTAAACACTAAAATGTATGATCCATATCAAATTTATGATACCTAAGCGATATTATATTGTTGAACTAAATTAAGCTTGTCGCTATTATACGAAATTCAACGCACAGTAGATTTTGAAAGCAGTAAAAAGTGATATGATCTCTTTAAACCAAAAAGTCATGTTTGGGGTTGGACGCATGCCTAGTTGCCTTACGTTACTACCAACAAGTCAATGTCTATTACATATATATTCATATATTTATACAACTATTTAAGCTGATGTCAATTTCCTAGGTTATTGATCTGGCGTTTGAATAAATAAATAAATAAAAACATACATGGTTTTGATAAGGATAAAGATGATAAAATTAATGTGCATATCTACAAAGTCCTAGAGCTATGTTTACATACTTAATAAGAACTTTACACATATGTGTGATGAATGAACTTACACATCATTCTTAGTGGCAAACCTGTAGTAATTCAAGACAATATAACTGATGTATGTGTATGATCACATGAATGAACCACAAAAAGCTAGGTCAAGTTGGTGGACTACTATATATACCAGTGAAGACATAATCTCCACACCTTGACATAAGATTAAGATAAACCTTTATAGGATTCAATCAAGTTTTCCTGAGTATAATATGTAAATTAAGTAGTTAAAAAAAGGAGAAACGGCACAAAAATATATCTAAGATTGTACCTGGACTCTGATTTCATTCTTGTGACTTAAAAGAGCAAAGATTCATCCCATGGTCTTCGGTCCTCGATTAAAGGTCTAAAGCATCATCGGTGTGCCATGGTTCTCAACTCATTGGATGAATTTATTAGTCAATAGTCATTGCATTTGTATGTTACAAGACCAAATGATTTACTCAAAGTAGATGTCTTACCAAATGGTCATTAATAGGTGAAAAATGTAAAGGATGTTGGATAGTAACACACTGCTTTTTTTTTTTCATGGTAGAAAAAAAAAGAAGAATAGAAATTAGTAAACACAACAAAATTTAACCAGCAGCCCATGATGTACCAATTGTTGCAAATGTCACAATCTCAACTTTAACTCCATCAAAAAAACCCATCTCATTGTTTGTCATATATATAGATATCTTGCTATGCCTATTAGTATTGTTGTGGTAATATCATTATTAGTACTGATATCTATCTTTATCTTGGTAAGTTTTAATTACTCCCCCACCTCTCCCACTTGTACTATAGTCTATTGCTAGCTACACACATACATAAAAGGGTTAAATACTGAAGAAAAATAAAGAAATGAGAACTGAGAGATGCGTGATATCACAATTGTTGAAGCAAGCATCATGAGTAGTAACAGTAGAGATGACCATGAGCATGATCTTGTGATGCCTGGTTTTAGATTCCATCCAACCGAAGAAGAATTGATTGAGTTTTATCTTCGGAGAAAAGTTGAAGGCAAAAGGTTTAATGTTGAGCTCATCACTTTTCTTGATTTGTATCGATATGATCCTTGGGAGCTTCCAGGTACGCAGTTCTTATCTTTCTTTCTATTTCCCTTTTCTAGCTAATTCCTGGTTCTTTTGATTAGGGTTATTTCTTGCTTTATTGGCTTCCATCTTGAATTATGTACTTATATTTTAATATAACTTCATTTCTTGAAGCCTTATAATACTGTAATCTGTTATTTATCACTATTTCATGAGGAAAACAATATGATTTTAGATGCCTAGCTATTTACAAATTATGTTATTACTATTGGTTAATGGAGAATTTTGTTTATAAACTGCTTATCATTTCTGATTTAATTATCAGTTGAATTTGTTTTTTCTGTTTGATTAACACAAAGAGAGTATGGATCAATTGATCTGAATTTTATTAAGTAGAGTCCATGCTCTTTATCTCACAGATTTCATGAGATCGAGTCTGGATTTATTTTTAGTAGTTAAAATTTAAACATCAACATTTATCATACAAGCGAAATTGGGCATGTAAAAGAAGTAGTTTCATTAACATTTTCTATGCAAGTAGGTAAGTACTTACATCATTCTACAAATTAATTAGGTAATTTACATTAGATAATTCTCTGACAAAATTTTCCATTCAAAGTTTTGTGTAAGCAACTAAGCAAGCACAATTTAGCTTAATTATTCATTTTTCTTCTACCAACAACTGAAAATAAAATAAAATTGCAGCATTAGCAGCCATAGGTGAGAAAGAATGGTTCTTTTATGTACCAAGGGACCGAAAGTACCGAAACGGAGATAGGCCAAACCGTGTAACTACATCCGGATATTGGAAGGCAACGGGAGCTGATAGGATGATTCGAGGTGAAGATTCTAGACCCATTGGCCTCAAAAAGACGCTTGTGTTCTATTCAGGGAAGGCACCAAAAGGAATTAGAAGTAGTTGGATCATGAATGAGTATAGGTTGCCACATAGCGACACCACCGATAAGTTTCAAAAGGTAACTTATTTATGTATTTAGGGTTTGATTCACTTGTATCATTGTTTTTCTCTCTTTAATTATCATATACTGGCTAGGGATAGATAATATCATCTTCTTAAATAAATTATTTTCATTTTAGAAGACATTTGATTTATTTGATAACTGCAAAGGTCAGTAATAATTAGCTTCTTCTTTTCTGGATGATATAACAATCTCCTCCACAATTTACTTTGTTAGAATTTCAAACCCTAGTTTACTACTTTGTATTTCTTCTTCTTCCTCTTCTCAATTTGTTGTTTGGTCAATACAAAAATATTGGATATATATAAATGTTATACTACTTTTCTGACTATACATTGCCTAGTTAATTAGCTTCTTTCTAGTTTGAATTCTTCCAACATTCATCAACTATTTGATTTAGTAGTTTATTAACATGACATAATGTAATGCGAATTTCAACTACTAGATATGTATGCATACGACTTTATCTTTAAACTAATAATTTTTTTACATATAATCTAACTGTTTTAAGGAATTTTTCTCTTGTGAGCATTTTATGTTCTTTATGTTACACAAGTTCTCATGCCCATGCAATCCTAATTTAATTACTCCTACATTTTCATTCAATATCTGTAGCTTAAAAGCTAGGAATCAAAAGCATAACCTTTTCTCGAAAAAATATTTAATTTACACCATCTCAATATACACAATGCACACTTAATCATTTTTCAAGGAAACAATGAGAGTAAGGAAAGACTTCAATCTTCTTACAAATCTTGTAAACTAATAAGTTCCTGGTAATGGTTGTTTATTCCAAAGTTATCTTTTAGTAACTAACGCTACACCAAAATTGTTTCATAGGCTGAAATCTCACTGTGCCGAGTATACAAAAGAGCCGGTGTAGATGATCATCTCCATCCTCTTCCAAATTCCAAGGCATCATCTTCAGTAAACACCGAGTTGCCACAAACCCTAGCCCCAATTGTAGGAGATTCATCATCGTCTTCACAATCATCAATGGACAAAAAGACAGCAACCAACCTCTTCAATACTACAACAACCACCAATTCAGTCGAAGAAGTTGGAACCACACTGCTCACGCAACCAAAAAACACAAATGGCACGTTAACTTCTCTCTTAGCTCCTAATACTTTTGCTAATTACATCGATCATAACAATGTTGTAATAAGCACTAGTGCTATAGACCAGCTTGTTAATCCGTTACCGCTGATGCAGTCTCAATTGCTTCCTTTTGGTATTTCGGATAAGTTATGGGACTGGAATTTACTGCCAGAGTCCGGAAGAGACCACTACTCAAATTTCAAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3329387.1	2.3e-90	transcription factor JUNGBRUNNEN 1
Swissprot	Q9ZVP8.2	1.7e-87	Protein LONG VEGETATIVE PHASE 1
trEMBL	A0A833QZ64	1.6e-90	Transcription factor JUNGBRUNNEN 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02450.2	91.03	7e-86	313	ANAC034;ANAC035;AtLOV1;LOV1;NAC035	NAC domain containing protein 35

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08305	AT2G02450.2	156	13	1	24	179	50	204	91.03	7e-86	313
AfisC1G08305	AT2G02450.1	156	13	1	24	179	50	204	91.03	2e-85	312
AfisC1G08305	AT2G17040.1	154	61	2	23	174	4	153	56.49	1e-50	196

Ortholog group

Species	Genes
Allium cepa	g183422.t1
Allium fistulosum	AfisC1G08305
Allium sativum	Asa7G06751.1
Arabidopsis thaliana	AT2G02450.1; AT2G02450.2
Oryza sativa	LOC_Os01g66490.1; LOC_Os05g34600.1; LOC_Os08g02160.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	27	151	86.6	1.4e-24

Gene Ontology

Accession	Ontology	Name
GO:0001666	P	response to hypoxia
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005992	P	trehalose biosynthetic process
GO:0006561	P	proline biosynthetic process
GO:0008361	P	regulation of cell size
GO:0009414	P	response to water deprivation
GO:0009507	C	chloroplast
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009644	P	response to high light intensity
GO:0009718	P	anthocyanin-containing compound biosynthetic process
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009962	P	regulation of flavonoid biosynthetic process
GO:0010029	P	regulation of seed germination
GO:0010120	P	camalexin biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042538	P	hyperosmotic salinity response
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043424	F	protein histidine kinase binding
GO:0043565	F	sequence-specific DNA binding
GO:0045770	P	positive regulation of asymmetric cell division
GO:0045995	P	regulation of embryonic development
GO:0046982	F	protein heterodimerization activity
GO:0048103	P	somatic stem cell division
GO:0048317	P	seed morphogenesis
GO:0048527	P	lateral root development
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0080060	P	integument development
GO:0090400	P	stress-induced premature senescence
GO:1900056	P	negative regulation of leaf senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network