Detail information of AfisC1G08377


Location
GeneChrStartEndStrand
AfisC1G08377chr115299245311529925465+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008803692.11.9e-49transcription factor HEC3-like
SwissprotQ9LXD8.17.9e-40bHLH transcription factor bHLH043
trEMBLA0A8B7CPQ08.1e-50transcription factor HEC3-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G09750.186.678e-39 157HEC3basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag486275.t1
Allium fistulosumAfisC1G08377
Allium sativumAsa7G06709.1
Arabidopsis thalianaAT5G09750.1
Oryza sativaLOC_Os08g01700.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00010.23HLHDomain13918026.63.9e-06

Gene Ontology
AccessionOntologyName
GO:0001046Fcore promoter sequence-specific DNA binding
GO:0001228Ftranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0005739Cmitochondrion
GO:0005634Cnucleus
GO:0046983Fprotein dimerization activity
GO:0009555Ppollen development
GO:0009733Presponse to auxin
GO:0010500Ptransmitting tissue development
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0048462Pcarpel formation
GO:0048766Proot hair initiation
GO:0048767Proot hair elongation
GO:0080126Povary septum development
GO:2000012Pregulation of auxin polar transport

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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