result

Gene information

Detail information of AfisC1G08382

Location

Gene	Chr	Start	End	Strand
AfisC1G08382	chr1	1531039633	1531043625	-

Sequences

CDS

Protein

Gene

>AfisC1G08382
ATGTCTGTGTGGTGGGTGGTTGTCTGTTTGTCTGTGTGGTTGCGGTTCGGGTTTGAAGTGGCTGCCAATGTAGGGTACAGGGTAGCGATGTGGGTGGTTGAGACTGAAGGTGACGTTGCCGATCTTTTTAACTATATGATCCAAACATTACGTCTTACTTGATCATTAGTTCGTTGGCCACGACTTCTTGCAAGTGGATACAACAGTTTGTATTTCTTCAATAGCTGTCTCTTTTTCCCCTTATTTTTTCATTCATGGGAATATCTCTGTCTGCCCACCCCTGGTGAAGACTTTCACATTAGCTGAGCTTGAGAAGGCAACATACGGTTTCAATGCTAGTAAAAAATTAGGTGAAGGTGGTTTTGGTTTTGTTTATCATGGTATGTTGGAAGATGGAAGTGATGTTGCTGTGAAATTTCTTAAAAGAGTAGATCAAGATAGGGATAGAGAGCCTGAGTTTATATCAGAAGTAGAAATCCTAAGTGGATTGCATCATCCGAATCTTGTAAAGTTGATTGGTGTTTGCATTGAAGAAGATAGGCATTGCTTGGTTTATGAACTTGTTCGGAATGGAAGTGTTGAATCTCATCTTCATGGTATGTACTTATATTTCTTGTCATAATTTTAATCCTTTCTTTGATTTACTTTGATCTCCCTCAGATTATCTAACACACACTCTGTAAAGTCTGTTATGTTCGCTATAAGAAAATCTTTTATTGGTAGCATACTTTACTAGCGTTTGGATATTAAATGCAACAGCTAGCCATTTTTTCCAATAAAAGTAAAGAATGAAACGCTGCCTAACGATCCCGCTAAGAATTCAGAAAAAATTTTATGAAATTTTTTCCATGCCGCTCATATCCTCTTCTTTTCACCTTTTCATATCCTCTGCTTTATTATCTCATCACCTAATAATTTTTGTTAAACTCCGCCCAAAAAAAGAAAAGCCTAACCAAATTCTTCTTCGATCTTCTCCCATCTCATATAATCCTTGTCTTGATTGACCAGCCCGATCAGGCTATGCACCAGCCCATGGACGGAGGTGACCAAACAGGTGGCCAGGCCGACGGCCTGTGTCCTATCGAAAGCAGTGTATGATGTTGTTGTTTACAGCAGTAGTCTAATCTGCTGCCTTACGGCACTAGAGGCTGCTACCACCACAACGGTGGCTGGGCCGCTAATGGCGTAGCCCATCACCTCTTCTACCCTCCAGTTTCCTATTCACTTTCATCTCCTTCTCTTTTCCTTTTTTTAACATGTATTAAATTCTTATTTACTAACTTTCTGTTAATTCCAAAACCGTAACATTACAATGTAAAGGGAAACGATGTGATAGAGAAAGAGCTTGAATTTTCTATTTTATGTCCTAGTTTCCTGAGCCAATTCAATAAAAGCGAAGAACTATCTAAAAGAATAATATTACTCTTCGTTTTATTTATTACTATTTTCATAATGCAAGAATGAAACTACATATGGATTTAAAAAAATGGAAGTTGCTGCTAATACATATAAGTGCATGTAGTTACATTTCCTTAGTACTATATTAATGCTACCAGGATAACACTGTTCTAATCTATTTCAAGTTTATGAATTCTCTTCTGCGTGCTTTCATTAACTTTGCCATGTATTTGAAATATTATACGCAGCTTAGTATACATACATAAACTAGTTCTAATTTGATACTCATGTATTGAAATGAAGTAAATTCTTGTCTACTTACTGCTAGGCGTTTATGAAAAATTTGTGAATGCCTTTGCAAAAGATGTTGAAAGTTTGAAAGTTGGCAATGATCTTACTGAGGACACAGTTCAAGTAAATATTATACAAACTTCTTCAATAATGGAACTTGTTTATGAATTCTATTTGCTTAATTATGGGCTTTTATGGTTTCATTTTACAAGGTCCACTAATTAATGAAGCTACTATACAAAAGGTATATTCTTATTGCTTGAACCTGATAGTAGTCAACTTACTGTTAAGTAATTTTCTAATTATCGATAATGAGTATCATCCTTACACGCGCTTTACTCTTATTTAGTAATTTTGACTATATTTGTAGGTTGAGAAGCTGGTCAAGGATGCAACTTCGAAGGTATCAAATACTAACCTGTTTTTATTGAGAATCAGTCAAAATGTTTATTACCCAACTTCATATTGCTTTGAAATCATAATAGGTTTACACTGTGGTTGTAGAATATCCTGTATTTTCCAACTAGCAAAGTTCATACGTAACTGATAACCGTATGGCAATAAGCAAGAGTATTTTACCAGGTTACTAATCACGCTTTCTTCTATCTTGTTAGGGAGCTAATATCGTTCTTGAAGGAAAGAGACACAGTCTCGGCATGACGTATTATGAGCCTACTGTAATAAGCATACAGAGTACTGAATTGTACTGAATTGAAGGAAAGGGTCACATTCTCGGCATGACGTATTATGAAGGAAAGAGACACAGTCTCGGCAGGATGTGGTCTAATACCAAAGCATTGAAAAAGGAAAATATCAAGTTGGAGTATAATTTAACGAGGTATGTTGTATCCTGAGATAATAGGAGCTCGTTTTTATTCTAGTTGCACCGTTGAAGGCAATTTTGTGTCATAAGACTAGTGTAGAGTATTAGCAAGGAGCTTTGAATTTCGTGCGTGTGGAAAAGACAAATCTGAGAAATGTGGAGAAAATTTTGTACCCATGCATGAATTATCGAAATCTTAGACGTCATGATTGGCAAAAACAATTGTCGCACACAACTGGACGTAGAGGAATGGCTAGATTTACCGACGATTTGGTTAGTTAATTAAACGTAGCATTCTTTACCTAGCTAGTTAATTAACTATCGATTGATTTATTTATTGTCTTTATAAATGTAGAGAAAGCAGAGTCAGGATTCATCGTCCATATCTAGAGCGGATGTTTGGGTTAAATCTCATACTAAAAAGAATGGTGACCTTTAATTCTTATTGGATAATACACAATTAGGAATTAAACACATATTCTTATTGAATAACACGCAACTGAATATTTTACTTTTTATGTGGTTCACTCATGTAACCAATGAAAACTAAAGTTTTATTCACACTGGTGCGAATAAAATTGCACTCAACACAATATAGAAAATAAAAAGGCATTAGAGGCACAATATACACGATTGCTCAAAATTCAACTTGATCACATTGATTCACTTTAAATATTCATTATTTAATCCGGGAAAAGATTGAGTCTCAAAAGAGATTGATTTGTGGATAAATCTATAAATTTGTGGATTACAGCTTTATGGTCTCCATGGTTCATTTAGAAATCTTTGCCAACAAATGCACAACCCAAACAACCGAAACAAATCTCAGGCCCACATCTTGAATTTTGGAGCTGTATTGCTTACATAACCGGAATACTGTTAGTCATACTCACTGCATTCCTGGTCTTATAGTATTTTTTATTTTACTTTCTTTAGCTTTGCTTCATTGATCTCTTGTTCCATGATGTTGTTCTCCACACTCTATTGCAGTCCCGTCGATGAATTTGTTTACTTCTATCAAATATATTTAAGCATCCAAATACCAAATTTTAACACATGTATTAGTGTATGGTTGCATTGCATTATGAAGTATTATTTGACCATTTTCATAACAGGATTACATTATAGTGTTGTGGGAACTAGCAAAAAGCACCTATTTAGCATTTTATCAACTGCTGCTCTTTCTCTTTTTTGCAACTTATGTAATAGAGCTACTGTAGCTTCTATTTAGTTACTTAGTCTTGATTTTTAGTATTAGTTGTATTGACAATGTTTTTTTCATGTTGAAATAGGGTACAAGAAGATGTGTTGAGGAAGCAAGCATAGGTTTCATGGTGTCCCTACTATACCATCCAGCAACTAAAATTGTCAGTCCTGTCAAGAAGCAGTTGAAAATAAAGACTCTGTTTAATATTCTCGGTCCATTGTTGAACCCTGCAAGAGTACCTTATGCTGTCATTGATATCTACCATGAAAATATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273749.1	1.3e-38	receptor-like serine/threonine-protein kinase ALE2 isoform X1
Swissprot	Q8RWW0.1	3.2e-34	Protein ABNORMAL LEAF SHAPE 2
trEMBL	A0A5P1EGS6	9.2e-39	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G20300.1	66.67	4e-36	148	ALE2	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08382	AT2G20300.1	111	35	1	50	160	327	435	66.67	4e-36	148
AfisC1G08382	AT5G56890.1	105	37	1	58	162	709	811	62.86	5e-32	134
AfisC1G08382	AT5G17990.1	80	34	0	184	263	224	303	57.50	1e-23	107

Ortholog group

Species	Genes
Allium cepa	g37511.t1; g412876.t1; g412920.t1; g415409.t1; g427471.t1; g478401.t1; g495501.t1; g501236.t1
Allium fistulosum	AfisC1G08382
Allium sativum	Asa0G01233.1; Asa0G04292.1; Asa2G05242.1; Asa6G04877.1; Asa6G07075.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	74	162	68.1	6.6e-19
PF00591.18	Glycos_transf_3	Family	196	262	63.6	1.8e-17

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0000783	C	nuclear telomere cap complex
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0003691	F	double-stranded telomeric DNA binding
GO:0004048	F	anthranilate phosphoribosyltransferase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005618	C	cell wall
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007166	P	cell surface receptor signaling pathway
GO:0009570	C	chloroplast stroma
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009873	P	ethylene-activated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0010068	P	protoderm histogenesis
GO:0046686	P	response to cadmium ion
GO:0019901	F	protein kinase binding
GO:0031627	P	telomeric loop formation
GO:0031965	C	nuclear membrane
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048367	P	shoot system development
GO:0071323	P	cellular response to chitin
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network