result

Gene information

Detail information of AfisC1G08465

Location

Gene	Chr	Start	End	Strand
AfisC1G08465	chr1	1544783000	1544785072	-

Sequences

CDS

Protein

Gene

>AfisC1G08465
ATGCTCGGGCAAAAAGACGAGTTCGCCCTCGGAAGTGAGAAGCAATATCGGTTATGGCACTGGGTTTTGTCTTCTTCTCCTGAGTCTGATTGTTTTGGTATTTTGCGGCCGGCTTTTAGCGATCCTTTGGACTGCCACGTGGCTGTATCTGGTTCCACGTCGGCGGGTGGTCGAGAAGTTGACCTCAGATATAGAATCGGTGTCGGAGAATTCATCGGAGAAGAGAAGGAGGTTGGAGGAGGAAAACAGAAGAGTTGTTTTTGAGGGGTTTTTGCAAAGAAACTGGAAAAAGATAGGTACAACTTTAAAATAGAAGAAGTGCAAGTTGTAATCTGCACATCCATTATTTTATGATATAATTCCATAAAATTATGAATTTTGAAATCTTAGATTATATCAGAAGATCACTGTTTTTGCTTCTTCCTCTTAATTTAATGTATAATTAAATGCCACGGTAAAATTGAACTTTAGTAATGGATCACATGTTGCTGATCAAGTAAAAGCGTTGTCGTCCTTAACTAGTAATTTAGTGCAGATATCAATATTAATATTATTTGTTTGGTGGAGATAGGTTTGAATGCATACAAAACCCAAAGCAAAAGGAAAATAAAATGAATTTGATATTCACGATTTATTGTTAGAATTGGAAATATGTTAATTTATGAATAGTGTTTATCTTCTTAAAACCATGACTATTGCTACATATGTGTATAGTGATCATATTTTTGCTACCTATCTCTGCTCAGATTCTTTCGACCGTCTCTTCTCAGGTATTTAAATAAAATAAAATGAATTCATCATTTGTTTATTGTCTTGTTACTCGCATTATTTGCGCCTGATTTATCTATAACAGTGCATCTGTTAATTTTAACGGAAGATTGCTATTGAGTTAGTTTATTAAGTTTATGTGGAAGTGTTTTTCTTTGATTCTTATCAGTTGAGAAATTGTTAGATCTTAGGATGAACAAGGATCCAAGTTTTGGGAAGTTTCAGGATACTTTATGAGCACATTTGAATATGTTTTAGGCTAAAGCCAAAGAAATGGATCATGTTGTAGTTTTCGAACGGTTGATTTCGAAAACTGAAGAAATGAATAAGTTTAAATCCGCAAGTGTTGATTTCGAGGATATTTTATGATTCGTTAGCTTCAATTGGATACGTTAATAAGCTGTAGTTTTCAATTATAAGTTTAAGAGATAACGTTTTTGCAAGGAGAATGTTGAATAATTAAAAAATTATTTTATGACTGCAATGTTTTTATTTGGTTAATTTGCAGTTGAATAAAAGATAAGTCATTTCATATATGTATTGTTACATGTAAATCGTAGTTATTAGTTAATTGCTAGCTGTATTTTGTATATTATCCATTATGTGGATCTAAGTTGTTGGATTTATATAGCAACTTCCTTGTCCTTTAAATAAGAATAATTATGTAATTTATTTTCTGTTCCGATGTAGATGATGATTGAAAAGAGGTACCTAGTTGATATGAGTTTGGTATAACATAGTTGAGCTTTGTTCGCTGTATAACATTTTATAAATACTTTAATACTGACTTAAAGTTGAAAAGGCTGATTAATTTTTTTCCAGCCAGATTGAAATATGTATTCTTGTGATGTTAGTATACTAATTCAATACTGTATTCTTGTGAAATATGTATAACATTTTATAAATACTTCAATACTGACTTAAAGTTGAAAAGGTTGATCAATAAAAATGTAAACCTTTTTGTTTTTGAACTTAATTTAATATGTATTCTTGTGTGTAGGTAAGGAAACCTTACACAATATCAAGACAAAGAGAAAGGTGGACTGATGGAGAACATGACAAATTTCTAGAAGCTCTAAGACTCTATGGCTGTTCCTGGTGCAAAATAGAAGGTACGATAGGAAATGAAGTTATATGTGATGTTAGTATACTGATATTATGTACTGTGTTCAATTAGAAGACCTTTTTTTTTATCAAGGTTGTATCTATTTCTTATTTGCTATACTTGCTACAGATTTTGAAGACTGCGCATTTGAATGGTTGTACTGGCCTCAAGCACATCATGTGGTGATACATCGACGGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021856035.1	5.5e-09	protein REVEILLE 1 isoform X2
Swissprot	Q8RWU3.1	1.3e-10	Protein LHY-CCA1-like 5
trEMBL	A0A0K9R483	3.9e-09	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G01060.1	64.44	8e-13	69.3	LHY;LHY1	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08465	AT1G01060.4	45	14	1	73	115	7	51	64.44	8e-13	69.3
AfisC1G08465	AT1G01060.3	45	14	1	73	115	7	51	64.44	8e-13	69.3
AfisC1G08465	AT1G01060.2	45	14	1	73	115	7	51	64.44	8e-13	69.3

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0001190	F	transcriptional activator activity, RNA polymerase II transcription factor binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005199	F	structural constituent of cell wall
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009409	P	response to cold
GO:0009530	C	primary cell wall
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009827	P	plant-type cell wall modification
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010243	P	response to organonitrogen compound
GO:0010600	P	regulation of auxin biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0019904	F	protein domain specific binding
GO:0032922	P	circadian regulation of gene expression
GO:0042753	P	positive regulation of circadian rhythm
GO:0042754	P	negative regulation of circadian rhythm
GO:0043496	P	regulation of protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043966	P	histone H3 acetylation
GO:0048574	P	long-day photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network