result

Gene information

Detail information of AfisC1G08627

Location

Gene	Chr	Start	End	Strand
AfisC1G08627	chr1	1576076129	1576077686	-

Sequences

CDS

Protein

Gene

>AfisC1G08627
ATGACATGCTGTGATATTATATCAATTTCTTTGTTAATGTATTTACTAAGTACCATTCTATTCCTCTTAAAATCAGCAGGCAACAATACTGAAACAAATACAAGTATAACAAGCAAGTCATCAAGCATTAACGACACAGAAAGTATCAATGGCCAAATTGTTGAAGTTCCAACTCTTAGAATTTACACGTTCTATGAATTAAGGATGGCAACGAGAAACTTTAAACTGGATCCAGTTATAGAAGGAGGATTCAGCTTGGTTTACAAAGGATGGGTAGATAGGAGTACTTTGAATCCTACTGGAATACCAGGACAAGGAATTGTTGTTGCAGTTGAAAAACTAAACCCTGAGAGCATTCTAGGACTAAAAGAGCTGCAGGTAAAACGAAAGTAATAGTAATAGTAATAAAAAACTCAAGTGGTCAAAATAAGCTAGCATATTTTGACGAGGTTAGTAAAATTTATATTTATGGATTGTAATAATCTATATAGACTAAAGATGACAATGATCATTAATCTAGTGGTAAGGCAGCTTCTATAAATTGCTAAAGATATTGGATTTGAAAGTCTATATGCACTGTCAGTTTCTGTTAAGATTTAAATGAAAAATCAAGAGATTACATATTAGCAGCTGAAACATTGATGATACATGGGCAGTAACAAAAATTCCACCAAAATGTTCTAGAAAATAATGTTTGCTTGACGGTATGTTTGATATATTCATGACCCATCTATTGTATTTGTACTTGTTGACTGGAAAAAAAAGCCAACTCTTGTATGTACGGAAAATGTCCAAACTAGTTGAAATGCTGTCTAACATATTGAATTGATAAAATCGTTATTACTTTGCATCACCCTGTCAATTGATTCATTTATTGTAATGTGTATAGGCTGAAGTGAAAGCTATAGGAAGTTTATCCCATCCAAACCTAGTCAAACTCTTGGGATATTGCATAGAAGACAAAGAAGCTCTTCTTGTTTACGAATACATGGCAAAAGGAAGCTTAGAGAATCACTTATTTAGAAGTGAGTTTTTGCATTTCTTACATATTATATATTAAGAAATGTGATTATGATTTATAACATAGTATTAATTAGGCATAGCTATATATTCTTGTACCCTATTTGCTTTGAAATTGGATTATAACATAGATTTCTTATTGTCATCTATTTCTATCGCAATGTGTGTAACAAGTATAATGTGCTTGTACTTTTATTGAACAGAAGCAACTGGCCCTGATCCACTGTCATGGAATACAAGGTTGAAAATATTGATAGGAGCAGCCCGAGTACCAAAAAATATCCAATTAGAGACCGTAAATTAAGGACTGATTTTTCTCGGTCACTAATTTAAGACAGATCATAGACTGAAAAACTCAGTCTTTAATTTTCGAGATTAAGAACTGAAATTCAGTCTGTATTTGGTTACAACAATTTGGTTGAGATGGCAGGGGTAATGGTCGGAGTAGTTTTTGAAAGTGTGCAGGCAGTTTTTATGGTGAAGTGGTGGAGGACAATTCAGTGGGTAGTATGGATGATGGGGCTGTGACAGTGATACA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009395361.1	1.8e-48	PREDICTED: protein kinase APK1B, chloroplastic
Swissprot	P46573.2	1.9e-42	Protein kinase 1B
trEMBL	A0A804IL61	1.3e-48	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G35600.1	49.71	2e-43	172	CST;CX32;Kin4	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08627	AT4G35600.2	173	79	4	25	193	35	203	49.71	1e-43	172
AfisC1G08627	AT4G35600.1	173	79	4	25	193	34	202	49.71	2e-43	172
AfisC1G08627	AT5G02290.2	162	79	2	33	193	27	187	50.00	2e-43	171

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	81	192	47.9	9.6e-13

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0050832	P	defense response to fungus
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005730	C	nucleolus
GO:0007166	P	cell surface receptor signaling pathway
GO:0009507	C	chloroplast
GO:0010183	P	pollen tube guidance
GO:0046777	P	protein autophosphorylation
GO:0052033	P	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response
GO:0090404	C	pollen tube tip

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network