result

Gene information

Detail information of AfisC1G08708

Location

Gene	Chr	Start	End	Strand
AfisC1G08708	chr1	1589602050	1589605992	+

Sequences

CDS

>AfisC1G08708
ATGAATTTGCTTGCAGAAAGAATCTCTTTACAAACACAACAATCGAGTCTTAGAAGTAGCACAAATCAGCTGCCAACACCAATTCTACTCTTTGGCAGACCAACTGCCACAAAGGAGTTGATACAAACAACAACATCAAAAATGGCAATGGAGAAATGCTTAGACTCCCAGTTGTGGCACGCTTGTGCTGGAGGTATGGTGCAAATGCCACCAGTTAACTCCAAAGTGTATTATTTCCCACAAGGCCACGCCGAGCATTCTCAATCTCATATTGATTTTGGTAATTCTTCGAAGATTCCACCCTTTGTACTTTCCCGAGTTGCTTCAGTCAAATTCTTAGCAGATCCAGAAACAGATGAAGTGTTTGCGAAGATCCTCCTTGTACCGATCCAACATCATGAGCTAGATATCAATGAGGAAGAACAAGGAGTAAGCAATGCAGCATCTGAACTGCATGAAAAGCCCTCTTCATTTGCTAAGACTTTAACTCAGTCCGATGCTAACAATGGTGGTGGATTCTCAGTCCCTCGTTACTGTGCTGAGACCATATTTCCTAAACTGGACTATACAGCAGATCCTCCAGTTCAGACCATTCTTGCTAAAGATGTGCATGGAGAGGTTTGGAAATTTAGGCATATTTATAGGGGTACTCCTAGAAGGCACTTGTTGACTACTGGATGGAGCACTTTTTTGAATCAAAAGAAGCTGGTGGCAGGAGATTCGATTGTGTTCTTAAGAGCAGATGATGGTGATTTATGTGTTGGGATTAGAAGGGCAAAGAAGGGTATTGGTTGTGGGCCTGAGCAACCTGCTGGATGGAACCCACCACTAGCTTATGGTGGTGGGGTGTCCATGTATTCAAGAGAGGAAGAGAATAATAATAGTATGAGAATGATGAGAAACAATGGTAGTTTGAAAACAAAGAGTCGAGTAATGAGTGAGTCGGTTATCGAGGCAGCTAGGCTTGCAGCAAGCGGTCAGCCATTTGAGATAGTGTACTATCCTAGGGCAAGTACCCCTGAATTTTGTGTTAAGGTGGGAGCAGTTAGAGCTGCAATGCGAGTTCAATGGTGTCCGGGGATGAGATTTAAGATGGCTTTTGAAACGGAAGATTCTTCTAGAATTAGTTGGTTTATGGGTACTATTTCTTCTGTTCATGCAGCGGATCCGATCCATTGGCCGAATTCGCCTTGGAGACTTCTTCAGGTGGCATGGGATGAGCCAGACCTGCTCCAAAACGTAAAGCGGGTAAGCCCATGGCTAGTGGAACTAGTTTCAAACATGCCGGCTATTCATCTATCGCCTTTTTCCCCACCAAGGAAGAAATTGTGTATCCCCTCTAACTCCGAATACACACAGAACAATCACCATTTTCCACCATTACCCACCTTCACTTCAAACCCCCATGGGCCCTACAAGGGCATACAGGGAGCCAGGCATGCTAATAACTACAGTGGTGGTGGTGGTGTTGGTGGTAGTAGCAATAATACTATCTCTCTTCCAGATTTTCATTTCAAAAAGCTTCAACCCGGGCTTTTTCACCCGGGCTTTCTTATTCATAGTAGGCATCGAACAAGTGAAAAGCTCATAGATGATGACATCTCATGTTTGTTGACCATCGGATGTCCTGGTATGAACAATGAGAAGGTGACACAAGTTAATGTGAAAAAAGCTTCTCAGTTGGTGCTTTTTGGGAAGCCTATATATACCGAAGAGCAGATATCTCTAAGCAGTGGTGCTGGTTCAAGATATAGCACATCCGAAGGAGGAAATACAGAGAAATCATCGGATGAATCGATGCCCTCGAAGCTCGAAATGGGGCATTGTAAGGTGTATAAGGAACCAGATGATGTTGGTAGAGATCTCGATCTTTCGTTATTGGCATCGTATGAAGAGTTGTACATGAAGTTAGCAGATACATTTGGACTTGAGAAATCAGTGGTCATCGGTCGTTTATGCTATCAAGATGCAACCGGTTCTGTTAAACTTGACACTGGTGCACCTTTCAGTGAATTTGCAAAAAGGGCAAGGCGGCTCACTATAATAATGGATTCAAGCAGCAGCAGCAGCATATAA

Protein

Gene

>AfisC1G08708
CAAACAATAGACACAGAATATTTTTCACTGTTTTTTCCTCTTCGCCTCTTCATTTTTCTTTTCATTTTCATTCCGTTCTCTTATCCTTCCTGCTCAGATCTCCTGATCGATTTCGCTTTGCTTGGAATTGATGCCGATTTTCTGCTTCAGAAGTTGATCCTTTTTGTGTTTTCTGTCTGAAGTAAGCCCAAATTTTAAAAATGATTTTCTCTCAGCTCTCTCTTGTATTCGAGCTGGAACTGGATTTCAGTTCTCTATATTTTGATTTTGAAGTGCTTGGTTTGTAATCGGTTTGCGTTTTGCAGATTGGACTTGCCTGTGAACTTGTGCCGTTCTGAATAAAAAAGGTATGAGCTATTTTTCAGTTTTTGATTATATGATTACACAGTCGACTTAAGTTTATGGATAAACTTTGAGTTAACTAATATCTAATTCTGGCATGGTTGCAAAAATTATAAATAGTAGATTGTGCTAGGGTTTATTCTCTTATAACTCTGGGTTATTGGATGCTGTTGCAGATTCGAAAGAGGAAAAAATCATCAGCAGGTGAAGGAAAGTTTAACCATGAATTTGCTTGCAGAAAGGTAACATTCTGCTTCAACAATTTCCTGCATTTTGCTCTGATTCAATTTCACTAACCGTCTTATAATGTATACTTATTTAGAATCTCTTTACAAACACAACAATCGAGTCTTAGAAGTAGCACAAATCAGCTGCCAACACCAATTCTACTCTTTGGCAGACCAACTGCCACAAAGGAGTTGATACAAACAACAACATCAAAAATGGCAATGGAGAAATGCTTAGACTCCCAGTTGTGGCACGCTTGTGCTGGAGGTATGGTGCAAATGCCACCAGTTAACTCCAAAGTGTATTATTTCCCACAAGGCCACGCCGAGCATTCTCAATCTCATATTGATTTTGGTAATTCTTCGAAGATTCCACCCTTTGTACTTTCCCGAGTTGCTTCAGTCAAATTCTTAGCAGATCCAGAAACAGATGAAGTGTTTGCGAAGATCCTCCTTGTACCGATCCAACATCATGAGCTAGATATCAATGAGGAAGAACAAGGAGTAAGCAATGCAGCATCTGAACTGCATGAAAAGCCCTCTTCATTTGCTAAGACTTTAACTCAGTCCGATGCTAACAATGGTGGTGGATTCTCAGTCCCTCGTTACTGTGCTGAGACCATATTTCCTAAACTGGACTATACAGCAGATCCTCCAGTTCAGACCATTCTTGCTAAAGATGTGCATGGAGAGGTTTGGAAATTTAGGCATATTTATAGGGGTACTCCTAGAAGGCACTTGTTGACTACTGGATGGAGCACTTTTTTGAATCAAAAGAAGCTGGTGGCAGGAGATTCGATTGTGTTCTTAAGAGCAGATGATGGTGATTTATGTGTTGGGATTAGAAGGGCAAAGAAGGGTATTGGTTGTGGGCCTGAGCAACCTGCTGGATGGAACCCACCACTAGCTTATGGTGGTGGGGTGTCCATGTATTCAAGAGAGGAAGAGAATAATAATAGTATGAGAATGATGAGAAACAATGGTAGTTTGAAAACAAAGAGTCGAGTAATGAGTGAGTCGGTTATCGAGGCAGCTAGGCTTGCAGCAAGCGGTCAGCCATTTGAGATAGTGTACTATCCTAGGGCAAGTACCCCTGAATTTTGTGTTAAGGTGGGAGCAGTTAGAGCTGCAATGCGAGTTCAATGGTGTCCGGGGATGAGATTTAAGATGGCTTTTGAAACGGAAGATTCTTCTAGAATTAGTTGGTTTATGGGTACTATTTCTTCTGTTCATGCAGCGGATCCGATCCATTGGCCGAATTCGCCTTGGAGACTTCTTCAGGTTTGCCTCAAATTGTTCAAATCAAGTAAATATTATATATTGCATAACCAAAACTTAAAAGTGTTGGATAAGCTAAGTTGAAATTTTAATTGAGGTGTAAATAGAGCCCATTTGGATAAAAGAGTTGAATAGTAACTATTGCACAGTCTTAAGTGAACAGCAAAATGTAAAAGTGTTTGGATAAACAAGTTGGAATTGTACTTAAACTTAGTAGTGGAACTGTGGAAGTTGAAATAAGTCATAAGACAGTATATGTTGTCGACTTTTAAGCAACTTGTTTCATCTCAGGAATAGTAAAAAATAACAGTTATTTTATAACTACTTATGAGTTGTTAAACATGCCAATACTCCAGATAATTAGCAAAAGAATGTAATATCATCGTTAAAATTCAAACTTAGCTTGTTGGTATTTCTACTTAGGGCAGATGAGTTACCCTTAAGAGATATTTGAGTTATATAAAGCTTGTTTTTCAAGGTAAATAATTTAAATTGGGTTTGTAGGTGGCATGGGATGAGCCAGACCTGCTCCAAAACGTAAAGCGGGTAAGCCCATGGCTAGTGGAACTAGTTTCAAACATGCCGGCTATTCATCTATCGCCTTTTTCCCCACCAAGGAAGAAATTGTGTATCCCCTCTAACTCCGAATACACACAGAACAATCACCATTTTCCACCATTACCCACCTTCACTTCAAACCCCCATGGGCCCTACAAGGGCATACAGGGAGCCAGGCATGCTAATAACTACAGTGGTGGTGGTGGTGTTGGTGGTAGTAGCAATAATACTATCTCTCTTCCAGATTTTCATTTCAAAAAGCTTCAACCCGGGCTTTTTCACCCGGGCTTTCTTATTCATAGTAGGCATCGAACAAGTGAAAAGCTCATAGATGATGACATCTCATGTTTGTTGACCATCGGATGTCCTGGTATGAACAATGAGAAGGTGACACAAGTTAATGTGAAAAAAGCTTCTCAGTTGGTGCTTTTTGGGAAGCCTATATATACCGAAGAGCAGATATCTCTAAGCAGTGGTGCTGGTTCAAGATATAGCACATCCGAAGGAGGAAATACAGAGAAATCATCGGATGAATCGATGCCCTCGAAGCTCGAAATGGGGCATTGTAAGGTGTATAAGGAACCAGATGATGTTGGTAGAGATCTCGATCTTTCGTTATTGGCATCGTATGAAGAGTTGTACATGAAGTTAGCAGATACATTTGGACTTGAGAAATCAGTGGTCATCGGTCGTTTATGCTATCAAGATGCAACCGGTTCTGTTAAACTTGACACTGGTGCACCTTTCAGGTTTGTCTACTTTTTGAATTGAATTTAACAGATGCTTATAATAATAGATTGCAAAGTATAAATTAGGGTTCTTATGTCATCTCCACTTCCTTTTTATATGATGATAATGCCTAGAGAGATCTCCATCTCCATAGAAATAAAATATATAATGTTGGTTGTTAAAAAGTGTTCATTGTGGAAATTGTCATTAACTGCAATAACAGTGAAGTAGTCATGTGTAGGACATATAGTGACCACAATAAGTTGGTAGGAATGAAAAGTTTATGATCGGCACCAGAAAATATGAGATGGAAATGTGGCGTAGATACGACAATTTTACAAAATTTCTCCTTTGTCAATGGCCCAAACTGGTTTTATATATGCATAAAAACAGAACATTTTTACCATTCTCGGATTAAATAAACTTAACCTTGTATTTGTTTCAGTGAATTTGCAAAAAGGGCAAGGCGGCTCACTATAATAATGGATTCAAGCAGCAGCAGCAGCATATAAGCTTCTCTAGGATGACTAATCTGTGGTGAAAATGTACAGCTGAACAAGTCACTAGTTGTATTGTCCATCTGTTAGTTAATTCTACGAAGTAGACCTTGTTTTTTTTTTTTTTAAATTTCTTTAAAGTGATAAATGCGTCATATTATAGGAAATACGAAAAATGTCCCTTTTCGTTTAGTATTTTCGATGATATAGTGCATGTAACTTTGTTGTTGGTATTGTTGTTGTTGAACTTTGTTTCTAGCTGTTAAATGTGCAACAAGTCGCTTTCTTTATATTCAGACGTCTTATGCTGTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259737.1	1.5e-243	auxin response factor 18-like isoform X1
Swissprot	Q653H7.1	1.8e-198	OsARF10
trEMBL	A0A5P1EYY5	1.1e-243	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	56.43	0.0	696	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08708	AT4G30080.1	684	236	17	47	691	9	669	56.43	0.0	696
AfisC1G08708	AT2G28350.1	669	260	15	48	684	1	659	54.86	0.0	655
AfisC1G08708	AT1G77850.1	581	300	19	54	609	16	567	39.07	4e-98	355

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	158	259	73.8	7.5e-21
PF06507.10	Auxin_resp	Family	319	402	114.7	1.6e-33

Gene Ontology

Accession	Ontology	Name
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0007389	P	pattern specification process
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009743	P	response to carbohydrate
GO:0010154	P	fruit development
GO:0010208	P	pollen wall assembly
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0048366	P	leaf development
GO:0048441	P	petal development
GO:0048442	P	sepal development
GO:0048589	P	developmental growth
GO:0048829	P	root cap development
GO:0048830	P	adventitious root development
GO:0051301	P	cell division
GO:0052543	P	callose deposition in cell wall

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network