result

Gene information

Detail information of AfisC1G08837

Location

Gene	Chr	Start	End	Strand
AfisC1G08837	chr1	1619067790	1619072025	-

Sequences

CDS

>AfisC1G08837
ATGTGCTCAATGAGTTGCTTTCCTTGTTTTGGTAAGAGAAAGAAAGAAAAAGAAGAGGATAACGTCTTCAATGATGGTCACCATCCCACGCCTGCAAATATTGAAACACAACATAAAAACATAGAATTGCAAGCCATTACCGAAACAGGAAATACTCAAGTTCAGAGCTTCACATTCCGAGAACTAGCTACAGCTACGAAGAATTTTACTCCTGATTGTCTTTTAGGTGAAGGTGGCTTAGGCAGAGTTTACAAAGGCTGCCTTGCAAATGGCCAGACTGCGGCAATCAAGAAATTAGGCAGAGATAGCCTGCAAGAAATCAATGAATTTCTAGTCGAAGTTTCGAATCTAAGTTTACTCAACCATCCCAATCTTGTGAGTCTAGTTGGTTATTGCGCAGATGGCGAGCAAAGACTTTTAGTTCACGAATTCATTCCTAATGGCTCCTTAGAAAACCATTTGTTTGATTTGAAGCAAGATCAGAAACCATTAGATTGGTATACAAGAATGAAAATAGCATATGGCGCTGCTCAAGGACTGGAATACCTTCACGATAAGGCGAATCCACCTATTATATACCGAGAACTGAAGTCATCCAACTTCTTACTTGATCAGGAATTGAAACCTAAACTCTCTGACTATGGGTTGGGTAAGCTAGGGACTTCTGGAGATAAGCCGCTGCTTTCATCGAGCCTTATGGGTACTTATGGGTATTGTGCACCGGAATGTTCTATGGGTGGGGAAGTAACTGTGAAGTCCGATGTGTATAGCTTCGGAGTTGTTCTTCTGGAGTTGATTACTGGCAGGAGAGCACTCGATACTTCCATGCCTTCTAGTGAACAAAATCTTGTATCATGGGCTCAACCGATGTTCCATGACCAAAAGAGGTACCCAGAGCTAGCAGACCTGAACCTGAAGCACGACTACCCTGCATCCGGTCTAAACCAAGCAGTGGCAATAGCTTCCATGTGCCTACAGGACGAGCCCTCAGTCCGACCCATAGCAGCCGACGTAGTCACGACTCTAAGCTTCTTAATCGAACCCATGCCCACCTCTAAGCCTACTCCAAACCCAGATGTCCCTACACAACCAACTCCAGAATCTGAACACTCAGACTCATCATACTCTGACTCTGAAAGCTCCGATGATGAACATGTAGTCGAAACTCTTCAGCTAGGAAAAAGAAAGCAGAAACAAGGAAGTCGTACTAGTTCAAAGAGCCGTTCTAGCAACGGAAGTGCTTTGAACGATAGAAATAATCTGAGCTCCCTTAGCTCAAAGTGTCCTATATATGATGATTATGGAAGTAAGAAGAGTTCTAGTGGAAAGTTGGTATGTTCTAGCTCGAAGTATTATGATGATGCGTATGAGTTTGATGAAAACGAGGGGAGTTCGAGCTCGAAAAACCATGAAGAAAGAAGTTTGAGTGTCAAGCATAGTAAAAAGGGCAGCAAGAAGATTGGGTCGAGCTCGAAGCATCATGAGAATTATGAAGGTATATCTGAAAATGAAAGAGAGAAACACCATGAAGAAAGAAGTTTGAGTGCCAAGCATAGTAAAAAAGGTAGCAAGAAGATTGGGTCGAGCTCCAAGCATCATGACAATTATGAAGATATATCTAAAAATGAAAGAGAGGAACATCATGAAGAAAGAAGTTTGAGTGTCAAGCATAGTAAAAAGGGTAGCAAGAAGATAGGGTCAAGCTCGAAGCATCATGAGATCAGTTGTGAAGATATATCTGAAAATGAGAAGGAGAAGAGTTTGAGCATGAAAAAGGATAGTAGATCGTTTAAGGATGGAAGTGATAGTCCGGGTTCGAGGCATCAAAATGATGATCATGAGAGTGGCAGTGATGATTCAGGTTCAAGACACTCTGATGAGAAATCTGAAGGGTCCAAACATGAATATGAATCTGATTGA

Protein

Gene

>AfisC1G08837
ATTTGGTTGAACAAAACAAAAAAAAGCAAAAAGAAATTATACAATGCAATATTTCACCGTCCTAGATCGGATTTAAGCCTTTTCAGAAGGGCTTCTCCATTCTTCGAGGCTGCTCCGGTCTGGGCACGGCTCCCTCCAACTTCGTGTAATATAGCCTACATTTTCCTTCATACTTTTTTATGTATGGTTATAGAGATTGATGAAATTTTGGTCTTTTGTTTGTGGTACATTGCCTATTTGGTGAAACATTAGGAATTTTTAACCAAAATCACTTATTTTGCTTCGTCATAAAACAAAAAATATCGAAATCTAATGTGCTCAATGAGTTGCTTTCCTTGTTTTGGTAAGAGAAAGAAAGAAAAAGAAGAGGATAACGTCTTCAATGATGGTCACCATCCCACGCCTGCAAATATTGGTGAGATTTTGTTTCGTTGTTCATTCCTTTTCTATTATTGCCATATATACATAAGTCGCCGTTCTAATATTCCGCTCCATTACATTGATTCAGAAACACAACATAAAAACATAGAATTGCAAGCCATTACCGAAACAGGAAATACTCAAGTTCAGAGCTTCACATTCCGAGAACTAGCTACAGCTACGAAGAATTTTACTCCTGATTGTCTTTTAGGTGAAGGTGGCTTAGGCAGAGTTTACAAAGGCTGCCTTGCAAATGGCCAGGTAATTAAACAGATATAAACTATGAATCGTAATTATTATTTTATGCATAGAAGAATATAGTTCTTACAATATGTTTCTTAATAGACTGCGGCAATCAAGAAATTAGGCAGAGATAGCCTGCAAGAAATCAATGAATTTCTAGTCGAAGTTTCGAATCTAAGTTTACTCAACCATCCCAATCTTGTGAGTCTAGTTGGTTATTGCGCAGATGGCGAGCAAAGACTTTTAGTTCACGAATTCATTCCTAATGGCTCCTTAGAAAACCATTTGTTTGGTAAACATTAATTCTTACTTGTTTAAAAATTACTTATTTCAAAAGGTTCATAATGACATTAAATACTTGTTATGTAAAACACAAAGCATTAAAACTGATTTTTATGTTTTGTGAAGATTTGAAGCAAGATCAGAAACCATTAGATTGGTATACAAGAATGAAAATAGCATATGGCGCTGCTCAAGGACTGGAATACCTTCACGATAAGGCGAATCCACCTATTATATACCGAGAACTGAAGTCATCCAACTTCTTACTTGATCAGGAATTGAAACCTAAACTCTCTGACTATGGGTTGGGTAAGCTAGGGACTTCTGGAGATAAGCCGCTGCTTTCATCGAGCCTTATGGGTACTTATGGGTATTGTGCACCGGAATGTTCTATGGGTGGGGAAGTAACTGTGAAGTCCGATGTGTATAGCTTCGGAGTTGTTCTTCTGGAGTTGATTACTGGCAGGAGAGCACTCGATACTTCCATGCCTTCTAGTGAACAAAATCTTGTATCATGGGTATGGATTTACACATTTACATCTTTGAAAATGTTCATGGTTTTGGTAAATTTACCATGGCAGAAATTCATCCCAAATTCAATGATTTTGATCACACGATGAACCTCTGCTTTAGTAAATTACCAAAATCAATGTTTGAACTATATTCTTGATATGTTGGCCCAAATGTGAGTCTCTATTGCCTATTTAGTACTACATTAATTTTGTTAGAATGTCCATGTTTTTTTACATGACTGTTAACACAAGATATTCTTAGTTCATAAACCATATTGATTTTTTGACTATAAAAGTTGCTCCCTTGTCAAAATTTATTAAAGAATCCTTTTGAGAGGTCTAACATAAAGAAGAAAGATGTTGTGTGTGTATCTATGAATGTTATGAGAAACACTTTGCTAATACTAATGGATATGAAGCCGATACTCCGCACTTTTGAATGCATAATCATTTTCCTAGTATTATGTGTGATAATATACTGGGTTATTATCTTTATTAATAATTGGAATGGAGTTTCAACTTTTTAGTCCGATCGTAAAGTTCCAAAATTGTCCTTATATACAAACAAGGGGTCAGTCAGAAAAGTTCGAATCCCGCTTAAAGAAAAAAATAACATCTATTTCAAATTAAAATTGACTAATACTATTAACACATTGTTTCCTTCTTTCCCACTCCAGTATTTAAAAAAAAAAACACCCCCTTTTTATCCTTTTCACCTCGATTTCTTCCAAAAATACCCCTTTATTTTATCTTTCTATTTTTTGTTCCATCTTCTTCCAGTTAAAAAAAAATAAACGTGCTTTCTTCCAAAAAAAACTTTTGAATTAACAATGCATTACACATTACTAGATTCAATAGCAATCTAAGTGCGCTAGGCACTAGGTTTATTTACAATCCAAGTTCGACCTAGACTTGATTGCTATCAAATCCTAATTTCTTTGGGGAAAACACTAGAAAAATTTATGTTCAACTTCAGAAAATATACGAATTTTCAAAATACCTTAGATTCATTTTCGTTATCTTCTTCGAAATCACTATTTTCTTCCAAATAATTGTCTTCTTCGTATGTTCTATCGTCACCAAGGTGATCCATGTTTACAGCAAAAGAAGAAGAAAATATAGAGAACATGGAAACATAAAAGTCATATTAACCAAAATAATTACAGTGGTAAATTAGTCAATTATTTTTATCTTTTAAATTAGCGGGGTGAAAAAGGAAGAAAACGGTGTGTTAATAGAATTAGCCATTAAAATTTTGATACATATATAAGATCACAAGTTCCAATCATAATCTTAACATAATGTTAATAATATTATTATTTTTATAATTTTCATCTTTTAGTTACCAAATCTATACTGAAAAATTAAAATTCAGCAATTTTATAGGATCTTTTATACGCACGTGCACTGCACGTGCCAAAAAATCTTGTTGATGTTATTATTATTATTATTATCATCATCATTATTATTATTAATTATTAATGGATGATCTGTGACAGGCTCAACCGATGTTCCATGACCAAAAGAGGTACCCAGAGCTAGCAGACCTGAACCTGAAGCACGACTACCCTGCATCCGGTCTAAACCAAGCAGTGGCAATAGCTTCCATGTGCCTACAGGACGAGCCCTCAGTCCGACCCATAGCAGCCGACGTAGTCACGACTCTAAGCTTCTTAATCGAACCCATGCCCACCTCTAAGCCTACTCCAAACCCAGATGTCCCTACACAACCAACTCCAGAATCTGAACACTCAGACTCATCATACTCTGACTCTGAAAGCTCCGATGATGAACATGTAGTCGAAACTCTTCAGCTAGGAAAAAGAAAGCAGAAACAAGGAAGTCGTACTAGTTCAAAGAGCCGTTCTAGCAACGGAAGTGCTTTGAACGATAGAAATAATCTGAGCTCCCTTAGCTCAAAGTGTCCTATATATGATGATTATGGAAGTAAGAAGAGTTCTAGTGGAAAGTTGGTATGTTCTAGCTCGAAGTATTATGATGATGCGTATGAGTTTGATGAAAACGAGGGGAGTTCGAGCTCGAAAAACCATGAAGAAAGAAGTTTGAGTGTCAAGCATAGTAAAAAGGGCAGCAAGAAGATTGGGTCGAGCTCGAAGCATCATGAGAATTATGAAGGTATATCTGAAAATGAAAGAGAGAAACACCATGAAGAAAGAAGTTTGAGTGCCAAGCATAGTAAAAAAGGTAGCAAGAAGATTGGGTCGAGCTCCAAGCATCATGACAATTATGAAGATATATCTAAAAATGAAAGAGAGGAACATCATGAAGAAAGAAGTTTGAGTGTCAAGCATAGTAAAAAGGGTAGCAAGAAGATAGGGTCAAGCTCGAAGCATCATGAGATCAGTTGTGAAGATATATCTGAAAATGAGAAGGAGAAGAGTTTGAGCATGAAAAAGGATAGTAGATCGTTTAAGGATGGAAGTGATAGTCCGGGTTCGAGGCATCAAAATGATGATCATGAGAGTGGCAGTGATGATTCAGGTTCAAGACACTCTGATGAGAAATCTGAAGGGTCCAAACATGAATATGAATCTGATTGATTTTGTACATTGAGTGTGTATTGATTGTTGTATTTTTCTTTTTCTTTTTGCTCAACTGTATATCTTACTCGTTTATTGTATGTGTTTGAAAAATTGGACTGCCTTTGTAAGGGAAATGTTAAATGATCCAAAGGGGTGCTTGGGTAAAAGACTGAAGCATGGTACTCTTAGTCACACACCACACTTTAAAACCAAAATGTGCATAATTTGCTTTAATG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241342.1	2.7e-127	probable serine/threonine-protein kinase PBL25
Swissprot	Q9SFT7.1	1.2e-111	PBS1-like protein 26
trEMBL	A0A199W6E2	9.1e-125	Serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G07070.1	52.58	1e-120	430		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08837	AT3G07070.1	426	174	7	4	414	1	413	52.58	1e-120	430
AfisC1G08837	AT3G02810.1	359	141	5	4	358	1	356	58.77	3e-119	426
AfisC1G08837	AT5G18610.2	357	139	4	6	345	4	360	56.30	8e-117	418

Ortholog group

Species	Genes
Allium cepa	g138220.t1
Allium fistulosum	AfisC1G08837
Allium sativum	Asa7G05382.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	74	339	143.4	7.2e-42

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0040007	P	growth
GO:0007166	P	cell surface receptor signaling pathway
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0010183	P	pollen tube guidance
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0090404	C	pollen tube tip
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13430	PBS1; serine/threonine-protein kinase PBS1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network