result

Gene information

Detail information of AfisC1G08863

Location

Gene	Chr	Start	End	Strand
AfisC1G08863	chr1	1626519361	1626520381	+

Sequences

CDS

Protein

Gene

>AfisC1G08863
ATGGAGTTAATCGGAAGGATTAGGAATGAGAATGTCGTAGAGTTGAGGGCGTACTACTACTCCAAGGATGAGAAGCTTGTAGTTTTCGATTACTTTGCTCAAGGGAGCGTTTCCACCCTGTTACATGGTATACAATCTTTTGTTGATGTTTTCTCAAATATATTGTAAGCATACATATATCTCGTACTATTACATGTAGGGAAGAGAGGCGAGGACAGGACACCATTAGACTGGGACACGAGGCTGAAAATACTGACGGGCGCCGCAAGAGGCATCGCCCGACTCAATGAGGAAAACAATGGGAAATTTGTGCACGGAAACATCTATAATTCTGTAAGTATATTAATACCATTATTATTGATTTGGAGTATACAAATATATACTATTTTACTCTGAACTTTTGTCCAACCATGGACTATTTATACCCTCGGTATGATTAATAATTGATATCTTAAATTGATACCACCGTAACCCCACCTTCGGTCACACCTCTGTTAGACGACTACACCAGTGCCCAACTTCAGCACCCACTCCCCAACGATTGTTTATTTGTTTGTTTATTTCTTATTTTCCATTTTTTACTTCAACTATGTTCTGTCATGGCCCCGCCTCTTCAGGCCATCAACGATCGAACCGAACCTGCCATTGTACTCAGCTATGTAATACTATCATACCAACCCTCTAAGTTCTAACTTCAAAACACTTATTCAAAATCCGGGCACGTACATGTCACAACTATTTTCAATAATTTCCCATCACCGATTACTCTGACTACCAAGCAAAAGCTAGTCGATTTGTTCGTCTTACTTCCCTCTCCATTTTATTTTTTGGTTGCATGCTCAAATAATTCACTATATAATTTGAGATGCAGGGAGTTGTAGTTTTGAGTAAAGGGAAGGATTATATGCACATATTTTTGTACAGTGGAAATCTATTGATGCAGGGTATGTTTGCACACAAAGTTCATGTGTACACAGGGTACGCCAGAGGCAATTCATATGTTTTTACTAATGTTTCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	TKW12102.1	3.2e-33	hypothetical protein SEVIR_5G014900v2
Swissprot	Q9SUQ3.1	4.0e-33	Probable inactive receptor kinase At4g23740
trEMBL	K3XFE6	2.3e-33	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G23740.1	67.02	8e-36	145		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08863	AT4G23740.1	94	31	0	1	94	381	474	67.02	8e-36	145
AfisC1G08863	AT1G64210.1	95	36	2	1	94	351	442	57.89	3e-27	117
AfisC1G08863	AT2G26730.1	91	37	1	1	91	395	483	57.14	9e-27	115

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	3	91	26.9	2.3e-06

Gene Ontology

Accession	Ontology	Name
GO:0022625	C	cytosolic large ribosomal subunit
GO:0005515	F	protein binding
GO:0016021	C	integral component of membrane
GO:0003729	F	mRNA binding
GO:0003735	F	structural constituent of ribosome
GO:0005739	C	mitochondrion
GO:0005576	C	extracellular region
GO:0004674	F	protein serine/threonine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005774	C	vacuolar membrane
GO:0006412	P	translation
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009610	P	response to symbiotic fungus
GO:0009737	P	response to abscisic acid
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0010069	P	zygote asymmetric cytokinesis in embryo sac
GO:0010152	P	pollen maturation
GO:0046777	P	protein autophosphorylation
GO:0080092	P	regulation of pollen tube growth
GO:0090406	C	pollen tube
GO:2000605	P	positive regulation of secondary growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network