result

Gene information

Detail information of AfisC1G08943

Location

Gene	Chr	Start	End	Strand
AfisC1G08943	chr1	1648509807	1648511040	+

Sequences

CDS

Protein

Gene

>AfisC1G08943
CTATTCTCTATATCTAATCTCCATCTTCTTCTTGATTCAATTTCCTTATAAGTTTCTTAAGGAAAAAAAATAACAAACTAAAAAGTAATCAATGGGTGATAGAACTAACGACTTGCTCTTGCCTCCTGGCTTTCGATTTCATCCTAAGGATGATGAAATCATTACTTCTTATCTCTTAGAAAAAGTCGCTGATCCAACTTTTAATGCAATAGTTATGGGAGAAGCTGACCTCAATAGGTCTGAGCCGTGGGATCTTCCAAGTAATATACAACTATATCATATTTATTTATGTTACTGGTAGCTGGAAATATCATACAACTGTGTGTTCTATGTCTTATATCTCATATATTTATGTTACTTATTGAACCAAATCTTTTCTTTAGATGTTAGGTTTTGCTTGTTTCAGCTCCTAACTTTAATTTATAGCTTTTGTTCTAATCGTAATGTGAAAAATTCAGTCATTTTGTTATATATCTGTGTTAACCAACTCTTGTAATTTCTAACTAACTTGTACATGCACATGTAGTTCTAATTTATGAGAATCTTTTGTATGTGTAGACTTAGCTAAATATGGAGAGGATGTGTGGTATTTCTTTAGCCCAAAAGTGAGAAGATACCCAACTGGCAGTAGAACAAATAGAGCAACTGTATCAGGGTACTGGAAAGCAACTGGAAAAGATAAGGAGATTTACAAGGGCAACAATGGAAATGGGCTGCTCATAGGCATGAAGAAAACCCTAGTTTTCTACACAGGAAGAGCACCAAAAGGCGACAAGACTAACTGGGTAATGCATGAATTTAGGCTCGATGGAAACTACCGATCCTTAAACGTATGTACAATAATGCCTATTTTCCAACAATGCCAAATGCATTAACGTCTATGTATACATATATTATATAGACTTTGATATTAACATACATTATACTGCTAAATTTACAGCAAGACTGGGTAGTGGTTATGGTGAAAAATAAGAAGACAAAGAAGGATTACTCGGTTGATGCATCAAGAGACGCTACTGGTTTAAGTATTAGTGATTATCCGAGTACTTATAATGAAATCTCATCCTATGAAGGTGGCAGTTCTTCTCATGACCCCTGTTTGATTTGGAGAATATATGGATCTATTGATTACAATTAGGCTAAAAAACATTGATAGTTTTTATTGTTGTTTGTTCGTTAAAGATAGATATTGATATATTTTTTCTATTTGTTCGTCATGTGTAGGTAATAATGC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252214.1	1.3e-57	NAC domain-containing protein 100-like
Swissprot	Q9SQQ6.1	2.0e-55	NAC domain-containing protein 46
trEMBL	A0A5P1FJB1	9.3e-58	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G18270.1	65.81	2e-55	212	ANAC087	Arabidopsis NAC domain containing protein 87

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08943	AT5G18270.2	155	44	2	10	158	21	172	65.81	1e-55	212
AfisC1G08943	AT5G18270.1	155	44	2	10	158	21	172	65.81	2e-55	212
AfisC1G08943	AT3G04060.1	155	45	2	10	158	20	171	65.16	3e-55	211

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	11	139	95.3	2.7e-27

Gene Ontology

Accession	Ontology	Name
GO:0000975	F	regulatory region DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0008361	P	regulation of cell size
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0010072	P	primary shoot apical meristem specification
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010223	P	secondary shoot formation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043424	F	protein histidine kinase binding
GO:0043565	F	sequence-specific DNA binding
GO:0046982	F	protein heterodimerization activity
GO:0048467	P	gynoecium development
GO:0048527	P	lateral root development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051782	P	negative regulation of cell division
GO:0090400	P	stress-induced premature senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1902074	P	response to salt
GO:1903648	P	positive regulation of chlorophyll catabolic process
GO:1904250	P	positive regulation of age-related resistance
GO:0090709

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network