result

Gene information

Detail information of AfisC1G08990

Location

Gene	Chr	Start	End	Strand
AfisC1G08990	chr1	1657207536	1657210521	+

Sequences

CDS

>AfisC1G08990
ATGTTGTTTAAGCAGAACAAGCTTTCATCCGAATCTGATGACTCTGTTTCTTGTCAGCTTGCTTTACACCACATGAAGCAAGTGGAAAGTGAAAATCAGTCAGTACCTTCCGTTTGCCTTCATTTTCCAGAGAAGAAATATACCTCAGATGGATGCCCACCTGATGAAAATAAGAATGTTGATTGTGAAGCTGTAAAGCGTGAGAATAAAAAGCGTCCTCTCGACGAAGAAGAGAATCTTGAAGTTTCCACTAAGCGCAAAAAGCAGTTAGATGAAGATTTTCCCATCTTCAGTGAGCTTTCATTTTCCAGCTTTCTCTCCGACGACACAAGTATAAAAGACACTTCTGTTTCTAAGAGGTCTAGCGATTCATATGACGAAAGTTTCAGCTTTCCAAGATTCACATTCAGCGGCATCGATGACTACAGTGATCGTTATGAATCCCCTATTCGAATGTCTTCGTTTCCTGGATATTACGATGACTCTATTAGGCCAGTTATATACAACAATCAAGTGGAAGAAGAACAGCTTTCAATTTTTGATTACCGTCCTCAGAAACCTGTTGCCATAGGCCTTAATCATCAAGCAGAACTTCCATCACTGAGTCCCAAAACATCCTGGGCTTTTAATACTAAGTTAACTGAGATCAGGACTGAAAAATTGACCGCTTCACATGATAGCCCTACTTGTCATTGTCTGGATGCTGGCTCTATCAGATGTGTGAGACAACATATAGAAGAAGCAAGGGAAAACATCGAGAGTGCTGTAGGCCATGAGCAATTTTCAGAGCTAGGATTTACTGAAATGGGCGAGTCTGTTGCTTTAAAATGGACAGAGAAAGAAGAAAGCTTATTCCATAAAGTTATGATGTGGAACCCTGCATCCACAGGAAGGAACTTCTGGAATGAGCTTTATCGTGCTTTTCCATCTAGAAGCAGCAAAGAGATTGTTAGTTACTACTTCAACGTGTACATTCTGAGGAAGAGAGCAGAACAGAACAGGTTTGATCCTTCTAATGCAGATAGTGATGATGATGAGTGGCAGCTAGAAGATAAAGATGATGACAACGAGAAAGATGGCTCAGCAGTTGAATCACCTGAAGATGGCTGTGTTGGGACGTACAGTGGAGTTGATGTTTGTGATTATGGCAGTGATAACAATGATGAGTGTGTAAAACTAGACTATGATGCGAAGGATGATTCATGCACTTCATATGAGGAGCTGCCTAAGTCTCATAGGGTTGACGTTTTGGATCATGGTTTAAGCTGTATGGATGGTCATGATTTGTTCTCTGATCATCGTGGTCATATTCCTTGGGACATGATGAACTACGCCAGTTCTTTGGATAAAGAACCTGATTTGCTGCCGACAAGTAATGTGATCAAACAGTTTGGAGATGAAACATGGGAGTAA

Protein

Gene

>AfisC1G08990
GATGATTCCTTGAAATTAATTAAAATATTGAAAATTAATATAACAGTCGCCCCTTTCTCCTCTTTTATAATTTTGATCTAAGATCTACCTTCAATTCTTGTCTGAATCTTCAAATTGTTTTGATGTATCTTCTTCTTTCGTTCTTCTCTAACCGATCGCATCAATTATTTCGCGAATGGTAAACTGGACCCGATTTAGGGTTAGGGTTTCGATTGATTTGGGGCTTTCTGGATTTAGCGTCGATTTCATTCTAAATTAGAGATTTAGGTTGGTTTTTTAGTGATTAGTCTTTGCCCTCTGTCTACGTCTCTTGATTCGGTCTGAATTTTAATTTACATCTAAGGTTAGGGTTTCAATTTTTTAGCCGTATTCTGTTTCAATCAGGTTTCAATTTGTCTTGAACCTACAATTCCTCTTTCTGTTTTATGTTATCTAGGGATTAATTTTGAAATTTTATTTGAAATTAAATAATATAATTGACCATTGAAATTTGCTATTTTCGGTTTTACCGTTCTAAAAATATATTTTCACAAGTCCTCATTTTTTCCATTTCTCTGCTGTACTTAGGCTGTTTCAATTCTCCATTTGTCTATTGTTCATAGGTAATCCATAAATTTTTAAAGTTAAAATCCTCTGTTGTTCTGAATATTGCAGCAACACTGCATGTTATGCCTGAGCTATCTTGTCCGCCTTGTAATATTTTCCAGTATATAAGGGTACTTTTATCGCATATTGTTATTGGTGTCTAACATGCGTTGACTTTTTTAATCGCAAATCCTTTTTTGTGCACCAGTATGGTTGTATGCGTGTCCTGTGTGCACGTGCACGAGAGTGGTTCCACACACAGCCGAAAGAATGAGTTGGGTCCTTGTAGCTTTAGCTAGAGACCTATAAAGCATGCACAAAATTTGAGATTATATCGACAAATTGTCCTTTGAGTCAAGCTAAGCTCTTACCACAATATGACTAAAAATACTGACTGGTTCATGAATACTTTCCCCATTGCAGAATATCAACAATGTTGTTTAAGCAGAACAAGCTTTCATCCGAATCTGATGACTCTGTTTCTTGTCAGCTTGCTTTACACCACATGAAGCAAGTGGAAAGTGAAAATCAGTCAGTACCTTCCGTTTGCCTTCATTTTCCAGAGAAGAAATATACCTCAGGTAAAATTTACATGCAAATTTGGTTAGAAAAAAGAGACATATTTCTTACTACTTTGTTTTCATATATGGTGGTTCAAAGATGGATGCCCACCTGATGAAAATAAGAATGTTGATTGTGAAGCTGTAAAGCGTGAGAATAAAAAGCGTCCTCTCGACGAAGAAGAGAATCTTGAAGTTTCCACTAAGCGCAAAAAGCAGTTAGATGAAGATTTTCCCATCTTCAGTGAGCTTTCATTTTCCAGCTGTAAGAAATATAGTTCTTGTTCATGTTTTATTTATTTTGTTAGAACATGTTAAATGGTTAATCTTATGAGTTTGGATGAACGATGCATATGTCAAACTATTTGGCACTCGATTATATTTGTCCCATGACCAAAATCCCCACATGATAAAAGGCTTCTACTCAAACATGCAATGCAATTTTGCTGCTACATGCTTTTGAAATTTAAGTTGTGAAATCTATTAACGCCTGCATTGGATTGTTATTTGTTCAGTTCTCTCCGACGACACAAGTATAAAAGACACTTCTGTTTCTAAGAGGTCTAGCGATTCATATGACGAAAGTTTCAGCTTTCCAAGATTCACATTCAGCGGCATCGATGACTACAGTGATCGTTATGAATCCCCTATTCGAATGTCTTCGTTTCCTGGATATTACGATGACTCTATTAGGCCAGTTATATACAACAATCAAGTGGAAGAAGAACAGCTTTCAATTTTTGATTACCGTCCTCAGAAACCTGTTGCCATAGGCCTTAATCATCAAGCAGAACTTCCATCACTGAGTCCCAAAACATCCTGGGCTTTTAATACTAAGTTAACTGAGATCAGGACTGAAAAATTGACCGCTTCACATGATAGCCCTACTTGTCATTGTCTGGATGCTGGCTCTATCAGATGTGTGAGACAACATATAGAAGAAGCAAGGGAAAACATCGAGAGTGCTGTAGGCCATGAGCAATTTTCAGAGCTAGGATTTACTGAAATGGGCGAGTCTGTTGCTTTAAAATGGACAGAGAAAGAAGAAAGCTTATTCCATAAAGTTATGATGTGGAACCCTGCATCCACAGGAAGGAACTTCTGGAATGAGCTTTATCGTGCTTTTCCATCTAGAAGCAGCAAAGAGATTGTTAGTTACTACTTCAACGTGTACATTCTGAGGAAGAGAGCAGAACAGAACAGGTTTGATCCTTCTAATGCAGATAGTGATGATGATGAGTGGCAGCTAGAAGATAAAGATGATGACAACGAGAAAGATGGCTCAGCAGTTGAATCACCTGAAGATGGCTGTGTTGGGACGTACAGTGGAGTTGATGTTTGTGATTATGGCAGTGATAACAATGATGAGTGTGTAAAACTAGACTATGATGCGAAGGATGATTCATGCACTTCATATGAGGAGCTGCCTAAGTCTCATAGGGTTGACGTTTTGGATCATGGTTTAAGCTGTATGGATGGTCATGATTTGTTCTCTGATCATCGTGGTCATATTCCTTGGGACATGATGAACTACGCCAGTTCTTTGGATAAAGAACCTGATTTGCTGCCGACAAGTAATGTGATCAAACAGTTTGGAGATGAAACATGGGAGTAAATATAATTAATTTTTCTATATTTGGAGTTTTCTTCTTTGTTTTTTTTTGGGGTAAATATATTGGTAGTTTTGGTATACAGCCCTAGTGTCCAAAGTGATGATTCTGGGGCTAGGTTTCTATTTTAGTTAAGTATGGAAAGTCTTATTCCTTGGATACACCTGTTCAACAATTTTATCCTATAAACAATTGCGTTAATGATCAATTAGTCAATTACATGTAAACTGG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020277159.1	2.1e-76	uncharacterized protein LOC109851439
Swissprot	Q9LDD4.1	5.7e-18	ARID and ELM2 domain-containing protein 2
trEMBL	A0A427B767	1.6e-54	Myb-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03470.1	47.94	5e-45	179		ELM2 domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G08990	AT2G03470.2	194	86	2	172	350	106	299	47.94	5e-45	179
AfisC1G08990	AT2G03470.1	194	86	2	172	350	107	300	47.94	5e-45	179
AfisC1G08990	AT1G13880.1	307	164	8	184	470	124	418	36.16	5e-39	159

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0043231	C	intracellular membrane-bounded organelle

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network