Gene information

Detail information of AfisC1G09172

Location

Gene	Chr	Start	End	Strand
AfisC1G09172	chr1	1687185036	1687185674	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010936099.1	3.2e-40	dehydration-responsive element-binding protein 2C
Swissprot	Q84ZA1.1	5.1e-35	Dehydration-responsive element-binding protein 2C
trEMBL	A0A6I9S1N0	2.3e-40	dehydration-responsive element-binding protein 2C

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75490.1	62.96	4e-33	137		Integrase-type DNA-binding superfamily protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G09172	AT1G75490.1	108	38	1	20	125	11	118	62.96	4e-33	137
AfisC1G09172	AT2G40340.1	180	85	6	29	205	50	223	47.78	1e-32	136
AfisC1G09172	AT5G18450.1	86	23	1	22	107	8	90	69.77	4e-31	131

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	50	100	45.3	7e-12

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005737	C	cytoplasm
GO:0005730	C	nucleolus
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0010017	P	red or far-red light signaling pathway
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0010286	P	heat acclimation
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0034605	P	cellular response to heat
GO:0042542	P	response to hydrogen peroxide
GO:0043565	F	sequence-specific DNA binding
GO:0045595	P	regulation of cell differentiation
GO:0070483	P	detection of hypoxia
GO:0071472	P	cellular response to salt stress
GO:2000070	P	regulation of response to water deprivation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network