result

Gene information

Detail information of AfisC1G09205

Location

Gene	Chr	Start	End	Strand
AfisC1G09205	chr1	1692843153	1692844149	+

Sequences

CDS

Protein

Gene

>AfisC1G09205
ATGACAGGGTTCGGCTCACCTTGTGGTGCTTGCAAGTTCTTGAGGAGAAAATGTGTTAGAGGATGTGTGTTTGCTCCTTACTTTTGCGATGAACAAGGAGCTGCACATTTTGCTGCAGTTCACAAAGTATTTGGAGCAAGTAATGTATCAAAACTTCTGTCCCAGCTACCAATTAATGACCGTAGTGAAGCAGCTCTTACTATTTCTTATCAAGCTCAAGCAAGACTTCAAGATCCAGTTTATGGATGTGTTTCTCATATTTTTGCTCTCCAACAGCAGGTAAAATATGTTTTTTTTTGCCAAAACTTATAGAGCCCTTTCATTTCCTTGCTATATCAAGAAAAAAACACAAGTACATGTAACAGTTCCAAGTGGATGACAATTTTCCACTATAGGCAGAATGCAAGATGTTATTTAAAAAAAAAATTAAATTCACTTAAATGAGTACATTAACTTCCAGCAACAAGGACCATTGGATTATACGATTAAATCAAATGGGAGTATATTTAACACTTTAAAACAAGTCATAAAATACACTGAATGACCCAGGTCAATGCTCTCTTCTTCATTTTTTACTCCAGTTTTACCCTTTTATATTCTTATGTAGACAGTGCATGTCAGATGTTTCATGATATATCTTTTGACATTTGTCCAGGTTGTGAATTTGCAGTCTCAGCTAACCTCACTGAAAACCCAAGCGGCCCTGCAAGAGTTTGCCACTAGTTCAACCTCAAGTCCACAAGAAGAAAGGTTGCCATACAATGACTTCTATCAGACTCAAGCTTCGATTCCGAATCAGTCGATGAATGTTGAAAATTATATGATGAACTACGATAATGGGTTTATAGAATCGGCCAACTTCAGCGAATCTTCTCACGATTGCAATGTGTATTCAACTGTGAGTGGTGGGAGTTCTTCTTGTGATATGAAACCTTTCTATAGTGAGGGCATGGATGACCTTCAATCCTTGGCATTTTCCTATATGAATCATACTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258730.1	1.4e-61	LOB domain-containing protein 29-like
Swissprot	Q5UG13.1	3.9e-48	Protein CROWN ROOTLESS 1
trEMBL	B9GS34	1.9e-52	LOB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G58190.1	52.15	3e-50	194	ASL16;LBD29	lateral organ boundaries-domain 29

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G09205	AT3G58190.1	209	86	4	7	204	11	216	52.15	3e-50	194
AfisC1G09205	AT2G42440.1	119	30	0	1	119	1	119	74.79	1e-49	192
AfisC1G09205	AT2G42430.1	107	27	0	3	109	11	117	74.77	5e-44	174

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	7	105	128.1	1.3e-37

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005654	C	nucleoplasm
GO:0009799	P	specification of symmetry
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0009965	P	leaf morphogenesis
GO:0010089	P	xylem development
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010311	P	lateral root formation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048441	P	petal development
GO:1900150	P	regulation of defense response to fungus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13945	LBD29; LOB domain-containing protein 29	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network