result

Gene information

Detail information of AfisC1G09311

Location

Gene	Chr	Start	End	Strand
AfisC1G09311	chr1	1709020689	1709022540	-

Sequences

CDS

Protein

Gene

>AfisC1G09311
TATATACACATATATATATATATATACACACACATATATATATACATACATATATATGTGTGTGTGTGTGCGCGCGCACGCATGTATATACGTATATACGTTTGTGTGTATACATACATACATCTCTCTCTCTCTGTGTGTGAACTTCATATGTCATGAATCGTGGCAACCAATACTTTTAAAGTACACATTTGATTTACTTACTAAAACTATTAAACCATATTTGAAAGATAAGGTTGATTGTTCTCATTATATTGATTCGTTAATTATAGCATATGTCCCAACCATTTGAATATCACAATAATTATCTGATGATTCAATCGATTGTATTGTATCACTCTAATGTTGAACAAAGTTCTATACAGATTACCGATCTTGGTATGGCAAAAATACTGATGAACGATGATCTTACAAGTTGTTCTAGTTCTCCAGCAAGAATGCTTGGAACATTTGGATATTTTGCACCAGAATATGCTATAGTTGGAAAAGCATCACTGAAATCAGATGTTTTTAGCTTTGGTGTGGTTCTTCTCGAGTTAATTACAGGTCGCCCCCCTATTCATAGATCATCTAATAAAGTCGACGAGAGCCTTGTTATATGGGTAAGCTTCCACAAATAATTAGTAATGAAACACTTTTTTCATATATTTATTTATATCAATGTATTTCCTAAAAGTCATTGATTTTAGGGAAATTTCACAATTACTCTCTCCTTATCCATATAACATCGGTGTGTGTGTTTGAGTTAAAAATATAATTGTATAGTTCATATTTGGGGTTTACCCAAACAAAGGATTGTAAAAGTAGCATATTTTCACCAAGAGAATTCTAATGTTCCAAAACTAAAGAGTTTGAGTATGTCATTTTTGAGAGATAGGGTGATTATCCATGCTTTACAAACAAGCATTCATGTTTGTCTTCAATTTATTCTTTAAATACACGAGAATCTGAGCCAGCTCAATCAAATTTAATATAAATTTATCACTGAAGCATTTTGTAGAAATATAAAAAAATTGCATCATATATAGGCAACAACTCGAATGCGCGATAGTAGGCTAGCAATAACCGAACTGCCGGATCCTGTACTAAAAGGAAACTTCCCAGAAGAAGAGATGCAAATAATGGTTCATTTAGCTCGAGAATGCCTTCACTGGGATCCCGACTCACGCTTATCAATGAGTGAAGTAGTTCAAGTACTATCAATGATCGCTTCTGATAAAACCAAGAGGCGAAATTTCCCTTCTGACCTCATTCTGGTAAATGCTATTTTTATTTCTTTAATCACATATATGAACTTCTCATTCATTTGTACAAGGACATGCACAGGGTTCTTCTTCTAGAAGCATTAAAAGCACCCAAGAAGCAGAGAGGAGAAACTCTTGCTGTGAAAACTCAAACATTATGCAGCCATCCTCACAAAGAGTTCGTACGAGGAGTTCATTGCCGGTAACCGTAGAGAGAAATCTATGTGAAAACTCACAAAATAAGATGGAGATGGTTTTGTCTGCAGAATACATGGAAAGCCTGATTGTACTTACGTCTAGAGTTCGTAGTTGGCGGTCATCAGATGACGAGATTGTGGATTTAACCGAACCTCGTTTTGAAGCTTTCGTGCAACCTAATTGTCAATCGCTTTGATTAATGTTTTTTTTCTACAGCAAGCTGTAATTAAATGGACATTCTAAATGTGGTATGTTGTTGGAATCATGGTCTTTTAAATGAGAGTATGTAACTCCTTACCTCATCCAAAAACTCAATTGCTGTACAGTGATGCTTAAAGTATTAATTTGTGTTTTTCTGGTATATGTATAAATGTAGGGTACAAGTGTTATTTTATTTCATTACATAGAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274100.1	2.2e-100	receptor-like serine/threonine-protein kinase NCRK
Swissprot	Q8VYY5.1	2.7e-47	Receptor-like serine/threonine-protein kinase NCRK
trEMBL	A0A5P1EDF7	1.6e-100	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28250.1	56.12	4e-51	198	NCRK	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G09311	AT2G28250.2	196	75	4	19	203	335	530	56.12	4e-51	198
AfisC1G09311	AT2G28250.1	196	75	4	19	203	335	530	56.12	4e-51	198
AfisC1G09311	AT5G02800.1	144	82	2	30	173	215	354	40.28	2e-25	112

Ortholog group

Species	Genes
Allium cepa	g401301.t1
Allium fistulosum	AfisC1G09311
Allium sativum	Asa5G01753.1; Asa7G01147.1; Asa7G01148.1
Arabidopsis thaliana	AT2G28250.1; AT2G28250.2
Oryza sativa	LOC_Os02g02040.1; LOC_Os02g02040.2; LOC_Os02g02040.3; LOC_Os02g02040.4; LOC_Os02g02040.5; LOC_Os02g02040.6

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	25	164	58.7	5.2e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006979	P	response to oxidative stress
GO:0007166	P	cell surface receptor signaling pathway
GO:0009506	C	plasmodesma
GO:0009860	P	pollen tube growth
GO:0010008	C	endosome membrane
GO:0010068	P	protoderm histogenesis
GO:0010089	P	xylem development
GO:0019901	F	protein kinase binding
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048367	P	shoot system development
GO:0048768	P	root hair cell tip growth
GO:0051020	F	GTPase binding
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network