Gene information

Detail information of AfisC1G09321

Location

Gene	Chr	Start	End	Strand
AfisC1G09321	chr1	1710633041	1710634001	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250172.1	1.9e-63	myb-related protein Myb4-like
Swissprot	Q9LTC4.1	2.5e-57	Myb-related protein Y19
trEMBL	A0A1R3L6N8	1.3e-63	Myb-related protein Myb4-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G23250.1	85.22	2e-58	221	ATMYB15;ATY19;MYB15	myb domain protein 15

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G09321	AT3G23250.1	115	17	0	1	115	1	115	85.22	2e-58	221
AfisC1G09321	AT2G31180.1	238	72	5	1	191	1	237	49.58	4e-57	217
AfisC1G09321	AT1G06180.1	228	73	4	1	186	1	228	49.56	5e-57	216

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	58.3	5.7e-16
PF00249.28	Myb_DNA-binding	Domain	67	112	57.1	1.3e-15

Gene Ontology

Accession	Ontology	Name
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009411	P	response to UV
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009845	P	seed germination
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network