result

Gene information

Detail information of AfisC1G09395

Location

Gene	Chr	Start	End	Strand
AfisC1G09395	chr1	1722776047	1722777144	+

Sequences

CDS

Protein

Gene

>AfisC1G09395
ATGGCGAAGGCTGCTGGAGGTCTCTCCCTAAGGCTGCAGGTTTCAATATTAATATTTCTCAGCTATATTACATGCATGCCTGGAGAGTTAATACTAAAGCTGCCAGTAATTAAGTTTTGTTTCATATATATGTAGGGCTTCTTCGGTGTGGAAAGAGTTGCCGTTTACGCTGGATAAATTATCTACGTCCTGACCTCAAACGTGGTAATTTCACACAGGAAGAAGATGAACTTATCATCAAGCTTCATAGTTTGTTGGGCAACAAGTATGTATTGTTCCACTTCCCTTTTCTTTTTCTTTTTTCTTTGTTTTTTTATTATATATAGGCATAACTAATTCAATGTTTATTCCATTTTTGTTCTTCACATATTTAGGAAATGAACTTGGCATTATTTCAGGCAGGATAGATAATAAAACGATGTTTGTAATTACCTCCACTGCAAAGAATTTTTTATAAATGATTCACTGCTTGCTGCAGTGGAGATGTTTATCTCTATCTCATTAAAAAATTAGTTAGATGTACAAAAAAAAAAAAAGATTTCTGCACGGTTGCATATAGCTAGGTGGTCGTTCACTATATATGTGGAGAAGCTACTAGACTAATTAATGTAGAAAACGATATGTTTTACAATGCAGATGGTCGCTAATAGCAGGAAAATTGCCAGGCAGAACTGATAACGAAATCAAGAATTACTGGAACACTCACATCAAACGCAAGCTCCTTAACAGTGGCATCGATCCTCAAAATCACCGTATTATAAATAAGAACGGCGGTGCCTCTATAAATTTTGCTGCAAACAAAAGCCAAATGACAAAAGAGTCAGATTTATTGGATGAAAATAGCATAAGTGGCACTGGCTTAGATGATGGTCAAGAAATGAAAATGAGGTGCTTAGATCTTAATCTTGACCTGAGCATTAGCCTTCCTTGTTCATCTTCTTCTTTGCCAAAGCAATTAGACGCAAGTGAAAGTATTAGAAGTGTTTGTTTGTGTTGTAATTTAGGGTTTGGAAGCAGTGGTAGCTGTCACATTTGCGGTCAAAAGAAAACTAGCTCGTTTGTACCACGATAGCAAATATATACTTGCATTTTATTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	AGO33164.1	6.3e-59	MYB transcription factor
Swissprot	P81393.1	2.0e-49	Myb-related protein 308
trEMBL	R9YXW7	4.5e-59	MYB transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G22640.1	50.00	6e-46	180	ATMYB3;MYB3	myb domain protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G09395	AT1G22640.1	208	74	5	5	183	43	249	50.00	6e-46	180
AfisC1G09395	AT4G34990.1	188	75	2	5	180	43	227	52.13	6e-46	180
AfisC1G09395	AT4G38620.1	205	74	5	5	187	43	243	51.22	2e-45	178

Ortholog group

Species	Genes
Allium cepa	g448737.t1
Allium fistulosum	AfisC1G09395
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	29	73	61.6	5.1e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009506	C	plasmodesma
GO:0009611	P	response to wounding
GO:0009625	P	response to insect
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010090	P	trichome morphogenesis
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0045165	P	cell fate commitment
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0048765	P	root hair cell differentiation
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network