Detail information of AfisC2G00021
| Gene | Chr | Start | End | Strand |
|---|---|---|---|---|
| AfisC2G00021 | chr2 | 2563947 | 2596854 | - |
| CDS |
| Protein |
| Gene |
| Database | accession number | e-value | annotation |
|---|---|---|---|
| nr | XP_020272208.1 | 0.0e+00 | lysine-specific demethylase 5A |
| Swissprot | Q3UXZ9.2 | 2.7e-100 | [histone H3]-trimethyl-L-lysine(4) demethylase 5A |
| trEMBL | A0A6I9S003 | 0.0e+00 | lysine-specific demethylase 5D |
| TAIR id | % identity | e-value | bit score | gene aliases | Short description |
|---|---|---|---|---|---|
| AT1G63490.1 | 44.44 | 0.0 | 813 | transcription factor jumonji (jmjC) domain-containing protein |
| Species | Genes |
|---|---|
| Allium cepa | g272094.t1 |
| Allium fistulosum | AfisC2G00021 |
| Allium sativum | Asa4G03916.1; Asa4G03917.1 |
| Arabidopsis thaliana | AT1G63490.1 |
| Oryza sativa | LOC_Os06g51490.1 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|---|---|---|---|---|---|
| PF02375.14 | JmjN | Family | 29 | 62 | 61.4 | 5.2e-17 |
| PF01388.18 | ARID | Domain | 120 | 185 | 37.4 | 2.6e-09 |
| PF00628.26 | PHD | Domain | 231 | 278 | 37.3 | 1.6e-09 |
| PF02373.19 | JmjC | Domain | 402 | 518 | 137.1 | 3e-40 |
| PF02928.13 | zf-C5HC2 | Domain | 611 | 662 | 54.3 | 1.1e-14 |
| PF08429.8 | PLU-1 | Family | 731 | 1015 | 63.5 | 1.7e-17 |
| PF08429.8 | PLU-1 | Family | 981 | 1180 | 79.3 | 2.6e-22 |
| PF08429.8 | PLU-1 | Family | 1201 | 1384 | 28.2 | 9.1e-07 |
| PF00628.26 | PHD | Domain | 1686 | 1730 | 34.1 | 1.7e-08 |
| Accession | Ontology | Name |
|---|---|---|
| GO:0003677 | F | DNA binding |
| GO:0046872 | F | metal ion binding |
| GO:0016570 | P | histone modification |
| GO:0006355 | P | regulation of transcription, DNA-templated |
| GO:0009887 | P | organ morphogenesis |
| GO:0007623 | P | circadian rhythm |
| GO:0009791 | P | post-embryonic development |
| GO:0010629 | P | negative regulation of gene expression |
| GO:0019953 | P | sexual reproduction |
| GO:0030154 | P | cell differentiation |
| GO:0031324 | P | negative regulation of cellular metabolic process |
| GO:0031981 | C | nuclear lumen |
| GO:0032453 | F | histone demethylase activity (H3-K4 specific) |
| GO:0032991 | C | macromolecular complex |
| GO:0044702 | P | single organism reproductive process |
| GO:0044710 | P | single-organism metabolic process |
| GO:0048518 | P | positive regulation of biological process |
| GO:0048608 | P | reproductive structure development |
| GO:0050896 | P | response to stimulus |
| GO:0051093 | P | negative regulation of developmental process |
| GO:0061180 | P | mammary gland epithelium development |
| GO:2000026 | P | regulation of multicellular organismal development |
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K11446 | KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase | EC:1.14.11.67 | - | - |