result

Gene information

Detail information of AfisC2G00036

Location

Gene	Chr	Start	End	Strand
AfisC2G00036	chr2	4311636	4314021	+

Sequences

CDS

Protein

Gene

>AfisC2G00036
CATCTTCTTCACTTGTTAAAATTTATAATATATTAATATTAATAATAATAATACATACACACTGCCTCCTCGCTATTATTATTTTTCTCTCTCCTCACGTTCACTTTGCTTCTTCCTCCCTTCTCTCTCCTCTTCCCCTTTTTCTGTTTAAATAAAACCCGTTCCTCTTTCATTTTCCTCTTCAGCGCTCTCCTTTTTTCCTTTCTTTGTCACTTCCTTCTTCTTCTTTAATTTATTCTCTCTTAATCACTCGGCTAATTTTAGGGTTTAAGTTGAAGATTGAATTCTGAAGCTGTTATTTCATACATTGGTACTCTTCTATTCCTTTAATTTCATTTTCTTTTCTTTTTTTCTTTCAAGTCGACATTTACATTTTCATGATTTTATCAGGGGATACTTTGAATGATATGTTAGTAAAATGATCCTATTTTCTTCCGATATTTGAAAAAAATTAGTAATGTTTCATTTATGTAATTTTGAATAATACTATGCAGTAAAAATCGTTATCAACCGAGGCAAGAAATAATGACCCCAATTTCCATCTAAATTATGACAAAATAACAACCATGAGTAGGACCCCACCACATGTATTTTGTATGGTACACTATTTATGCACAGTACGATTTTTGTTTCGGTCAAGTAATCTCACTGTCTAATATTATATTATTATTATTTGAATATAATTTTTTGAATTATTATGTATTTGAATAATTTAGTGAAATTATTATGCATTCCAGAGAAAGAGGTAGAATGGCTTTAAATGGAAATTTCATGGATGATCAACTTGACATAATGTGCGAGGGGTTCTTCGATAACATCGATGATTTGTTGGACTTTTCGATCGATGATCAACCTTTAGGAATGTCCGATTCTGGAAATTCACTCCTCGATATTCCTTTGCCTGCTCAATTTTCTGTTCCTGATAGCAAGGATTGCCGCATTGCACCGAACTCTCAAGAAACCAAAATCGTATGTTTTCATTTTTTTATATCTTATTTATGCTGTGAGCAATTCGAACCTATAACATTGGTACATGTTCATAGTTCTATTATTGGTACAGATTAAAACCTATTTTCCTTAATTTGAACGGTGTCTTCTAGTAGTTATTGACTTATTTATGTGACTTTAAGTGGTTGGCAAAATTTAAGTCATTACTTTAAATTTTGTTACAATTTCAATTATCTATTCAAATACTTTTATCTTTTTTGCTTTACACTCTATGGTATTGCTTAAAAGTTACTATTCAACTATAGATTTTCAAATCATCTATCGAGTTCAAAACTGAACTTCTAAACTAAATATGTTCCAAAATTCCTCTTTTTCAGGGTAATGATATCGGCATCGACGAAGATTGGATATCAGACTTCCTCTACGACTCAAATTTGGATGCAGAAATCAAGAAGAGCGGTTCTGTCTTCCAATCCTTTAGCCCTACATCTGTGCTTGAACCGACCAATAACACCACCGAAAATGCCCTAATATCATCGTCAGCCTCGTCCTCCGCTTCGTCGCACGCCATGCCACCGCCGCCGTCAGGGACCATGAAACTTCCGGTACCGGCTCGTGCACGTAGCAAGCGCCCGCGTAGGCCCATCATCCCAATCCTCCCTCCGACCGATGGGCCTCCTTCCATCCCGACCATCCTACCCATTACCTCCGAAATCGAACCGAGCCCCCCTAAAAGGATCAAAATCATACAAAGGCCAAACCTTACAGACCTCAACCCTAACTTCGACGGCGTAAGGAAGTGCATGCACTGCGGAATACACAAGACCCCACAGTGGAGGGCCGGCCCGATGGGCCCAAAGACGCTGTGCAATGCTTGTGGGGTACGGTACAAGTCGGGCCGGTTGTTCCCGGAGTACCGGCCCGCCGCTAGCCCTACTTTCGTGCCTAGTGTGCACTCGAACTCGCACAAGAAGGTCGTGGAGATGAGGAACAAGGTCATTGAGCATAAGGTCGCAAAGGAATATAACCCCGCCGCCAAGAATTGTGATTTGCTCAAGTACATTAGGGTTTAAGTTTTTTAAATTTTACTTAGTGTGTTTGAAGAATTAATTATTTGGTTGTTTTTTGTTCATTTCATCATGTTCCCCTTGTTTTTGTATGTATAAAAAGGAGAAAAGGAGGAATTAAGGAGTGTAGGAGAAAAAAAAATACACCTAGGATTGAAATTTAGATGAGAAGAACATTGAAGGGAGAATGGTAGGTTGAGGGTTGTTTTATATTTGAAGGGGAAACTTTAGCTGTTTTGATATTCTGTTTGTTGTATTGAATTGCTTCTGCAGTCAATTGGTTCATAGGTTATATTCCATTTCTGTATATTTTGTTTTTCTTACTGCATAATGTACAAATTTGTTCGCATTTGTAGAAATAAAAGAAAGTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020570577.1	5.6e-41	GATA transcription factor 4-like
Swissprot	Q9SV30.1	1.7e-31	GATA transcription factor 8
trEMBL	A0A8T3CC72	4.9e-39	GATA-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32890.1	35.77	1e-34	144	GATA9	GATA transcription factor 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00036	AT4G32890.1	274	129	9	31	287	20	263	35.77	1e-34	144
AfisC2G00036	AT1G08010.2	295	143	11	17	287	11	286	36.95	2e-34	143
AfisC2G00036	AT1G08010.1	295	143	11	17	287	11	286	36.95	2e-34	143

Ortholog group

Species	Genes
Allium cepa	g177201.t1
Allium fistulosum	AfisC2G00036
Allium sativum	Asa0G00803.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	223	256	55.5	2.8e-15

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009735	P	response to cytokinin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010187	P	negative regulation of seed germination
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0030154	P	cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network