result

Gene information

Detail information of AfisC2G00061

Location

Gene	Chr	Start	End	Strand
AfisC2G00061	chr2	7019512	7021207	+

Sequences

CDS

>AfisC2G00061
ATGAAGGGTAATTTTGAACTGCATCATGGTGAACTTGACCTGATCCAACCCAATGAGTTATCATGGGATCACTGCAACCAAGTCGGCCAAAACTACATCAACAGTGATATCTCCGAGTTCATGAAACGTGTTGCTCATCACATATCTTCAGATAACTCACTCGATTCCATAACCGATGGATACTCTGATGATAACATTGCAATTTCACCTGTTCAGACTGAATACCGTCCTCATAAAGCTTCAAGAAGAGATCACAGCATCGGTATCAGTGGCCATGGTGAAGAAACCCGTAAACTAGAAAATACCGATGATCAACATGGATTGACTCAGATAACACTACTACTAGAATGTGCAGTAGCCATATCCGTCGACAACTTAGTCGATGCAAATCGAATTCTACTCGAGCTAAGTCAAGTATCCTCACCCTATGCACCTTCCTGTGCTGAAAGGATCGTCGCCTACTTCACTAGGGCCATGGCCAGCCGAGTCATGAGCTCGCACCTAGCAATATATTCACCGCTTGTTCCCTACAAGACCATACTTTTGTCGTTCCAAACGTTCAATAACATATCTCCATTCGTTAAATTCTCGCACTTCACCGCCAACCAAGCCATCTTGGAATCCTTCCACCAACAAGCGCAAGTGCACATCATAGACTTAGACATCATGGAAGGCCTACAATGGCCTGCCTTGTTCCACATACTGGCGACCCGGCCCGATGGGCCTCCACGTGTCAGGATGATGGGCCTAGGGGCCTCAATCGCCTCTTTGCAAGAGACGGGGAAGAGGCTTTCGAACTTCGCTAAGCGGCTCAACATGCAGTTCGAGTTCGTGCCGATCGCGGAGAAGTTTGGGAACCTGGATTTTTCGGTTGTCCGACCGCGTAAGCACGAAGCGGTGGCCGTGCACTGGCTCAAGCACTCTCTGTACGATGCGGTCGGGTCGGACCACAGCGCTGTGAAGCTTCTGGAAGCTTTGAATCCTAGAATTGTAACGTTGGTCGAGCAGGAATCGCTGCACGTAGGTTCGTTTCTGGACCGGTTCGTCGGGTCGTTGCATTACTACTCGACGTTGTTTGATTCACTTGGTGCGACTTTAGCTACGGACGATTCGAACCGTAGAATGGTGGAAGATGGTCTATTGGGGAGGGAGATTAGTAATATTTTGGCGATAGGAGGGCCGGCGAGGAGCGGGGAAGAGAAGTTTGCGAGTTGGAGGATGGAGCTAGGGAGTAGATCGAGGTTTATGCAACTTCCTATGAGCTCTAATGCAATGGCACAAGCTCAATTGATATTGAATATGTACCCTCCTTCACTAGGGTACGCCATAATGCAAGGGGATGGAACACTAAGGCTTGGTTGGAAGGATACCGCTTTGTACACTGCTTCCGCTTGGACGTCGAGATTAGGGTTTTGA

Protein

Gene

>AfisC2G00061
ATTCCAATTCCTCCATACATCATTTCTCCCCCTTAATATTTTTTCTTCAATCTTTTTTTCCTCTCTTTCTCCAAAATGAAGGGTAATTTTGAACTGCATCATGGTGAACTTGACCTGATCCAACCCAATGAGTTATCATGGGATCACTGCAACCAAGTCGGCCAAAACTACATCAACAGTGATATCTCCGAGTTCATGAAACGTGTTGCTCATCACATATCTTCAGATAACTCACTCGATTCCATAACCGATGGATACTCTGATGATAACATTGCAATTTCACCTGTTCAGACTGAATACCGTCCTCATAAAGCTTCAAGAAGAGATCACAGCATCGGTATCAGTGGCCATGGTGAAGAAACCCGTAAACTAGAAAATACCGATGATCAACATGGATTGACTCAGATAACACTACTACTAGAATGTGCAGTAGCCATATCCGTCGACAACTTAGTCGATGCAAATCGAATTCTACTCGAGCTAAGTCAAGTATCCTCACCCTATGCACCTTCCTGTGCTGAAAGGATCGTCGCCTACTTCACTAGGGCCATGGCCAGCCGAGTCATGAGCTCGCACCTAGCAATATATTCACCGCTTGTTCCCTACAAGACCATACTTTTGTCGTTCCAAACGTTCAATAACATATCTCCATTCGTTAAATTCTCGCACTTCACCGCCAACCAAGCCATCTTGGAATCCTTCCACCAACAAGCGCAAGTGCACATCATAGACTTAGACATCATGGAAGGCCTACAATGGCCTGCCTTGTTCCACATACTGGCGACCCGGCCCGATGGGCCTCCACGTGTCAGGATGATGGGCCTAGGGGCCTCAATCGCCTCTTTGCAAGAGACGGGGAAGAGGCTTTCGAACTTCGCTAAGCGGCTCAACATGCAGTTCGAGTTCGTGCCGATCGCGGAGAAGTTTGGGAACCTGGATTTTTCGGTTGTCCGACCGCGTAAGCACGAAGCGGTGGCCGTGCACTGGCTCAAGCACTCTCTGTACGATGCGGTCGGGTCGGACCACAGCGCTGTGAAGCTTCTGGAAGCTTTGAATCCTAGAATTGTAACGTTGGTCGAGCAGGAATCGCTGCACGTAGGTTCGTTTCTGGACCGGTTCGTCGGGTCGTTGCATTACTACTCGACGTTGTTTGATTCACTTGGTGCGACTTTAGCTACGGACGATTCGAACCGTAGAATGGTGGAAGATGGTCTATTGGGGAGGGAGATTAGTAATATTTTGGCGATAGGAGGGCCGGCGAGGAGCGGGGAAGAGAAGTTTGCGAGTTGGAGGATGGAGCTAGGGAGTAGATCGAGGTTTATGCAACTTCCTATGAGCTCTAATGCAATGGCACAAGCTCAATTGATATTGAATATGTACCCTCCTTCACTAGGGTACGCCATAATGCAAGGGGATGGAACACTAAGGCTTGGTTGGAAGGATACCGCTTTGTACACTGCTTCCGCTTGGACGTCGAGATTAGGGTTTTGATGTATGATGATTTTGAGTGGTTATAATTTAGGATTTTACTTAGATTTGTGATATAGCTAGCTTGGTTTTAATTTGATTGTTTCTAGATTGGCATATGGAAAAGTGTAATGTTAAGCAAGTCCTTTGTGGTTAGGTGGGGATGAAAGGGATGCATATTGCATGAATATTCAGGGGATAAAATAGAATAATCCAATGAATGAGGCTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267928.1	9.9e-159	LOW QUALITY PROTEIN: protein SCARECROW-like
Swissprot	Q9M384.1	6.1e-113	Protein SHOOT GRAVITROPISM 1
trEMBL	A0A8B7D0N6	1.2e-161	protein SCARECROW-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54220.1	55.24	6e-116	414	SCR;SGR1	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00061	AT3G54220.1	382	159	6	94	468	276	652	55.24	6e-116	414
AfisC2G00061	AT5G41920.1	386	183	10	94	468	27	402	47.15	3e-88	322
AfisC2G00061	AT3G03450.1	460	275	15	32	465	89	544	33.70	2e-55	213

Ortholog group

Species	Genes
Allium cepa	g523250.t1
Allium fistulosum	AfisC2G00061
Allium sativum	Asa5G00136.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	112	466	346.7	1.3e-103

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008356	P	asymmetric cell division
GO:0009536	C	plastid
GO:0009630	P	gravitropism
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009956	P	radial pattern formation
GO:0010029	P	regulation of seed germination
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0044702	P	single organism reproductive process
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0048519	P	negative regulation of biological process
GO:0048608	P	reproductive structure development
GO:0051457	P	maintenance of protein location in nucleus
GO:0090610	P	bundle sheath cell fate specification

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network