result

Gene information

Detail information of AfisC2G00073

Location

Gene	Chr	Start	End	Strand
AfisC2G00073	chr2	8626220	8628313	+

Sequences

CDS

>AfisC2G00073
ATGAGCCAAATCTCCATTCTAATAGCTTCATTCATAATTTTCACAGCCCTTCATGCTACTTCTTCACAATCAACCAATACTAACACAACCGAATTCACATGTACGCGGCACACGACATGCAAGACTTTCGTGATCTACCGAACTCAATCGCCAGACTACCTCGACCTAGGTCGAATCTCCGACCTCTTCTCCATTAGCCGCCTCTCCATAATGAAGGCGAACGACTTGCCATCCGAAGACATCATTTTTCGCCCTAACCAACTCATTTACGTACCAGTTACGTGCGCGTGCTCGAACAACCAATCTTTCTACAACACTTCGTACTACATCAAATCCCAAGATAGCTTCTACTCCGTCTCCATCACCGCGTACCAAAACCTCACGAACTTTGAGTCCGTCGAAGCCTTGAACCCTGAGCTCGAGCCCACTAAGCTCAAAATCGGGCAGGAGGTCGTGTTCCCGATCTTCTGCAAATGCCCTTCGAAGCAGGACCTTGATCGAGGCTTTAATTTCCTCGTCACATACGTTTGGCAGTCAAATGACGACTTGGTAACGGTGAGTAAAAGAACGGGCACTTCGATCGAAGATTTGATGTCGGTTAACAATTATAGGAACTTCAGCGTGGCTGTCGCGTTGCCGATAGTTGTTCCGATGACAAGAAAACCTCTGATCGACTCGAGCGTGTTCGAAAATGGTGTCGGTAGTAGTCAAGGGATCGATGGTCGAGGTAATTATCATAAGAACAATCATGTTTTGGTCGTGCTTGTTTGGTTGTTAGGATCGATCCTTGCATCAATCGTAGTGTACTTGTCATTTACGACATTTCTCAAAGGATGCTCTAGCAAGCTTATGATACGTATGAATTCGAACTTGGAGACCAAAAACTTGCTTCGATCGAGCAACACTTTCTCGACCGACCCAAGTCTAAGCCCAAAAATCTTCCCACCGGACAAGCTTTTGACCGGAGTAACCGAGTATATCGATAGACAAATCGTGTTTGAAACTAACACCATTTTATCGAACATCGTGAGTAGGTTAAGCGACTCGATGTATCAAGCAACCATAAACAAGGAAGCGTTCGCCGTTAAACAAAGCAAAGGCGACATTACAAGCGAGGTCAATGTTTTACGTATGGTCAACCATGCGAATTTGGTCAAGCTCGTTGGTGTTTCTGAAGAGCACGAAAACAGTTGCTTTCTTGTGTACGAGTTCGTGGAAAACGGATCGCTCGATAAATGGTTATATCAAAGTACGGCCAGTTCGCAATTCCTTTCTTGGAAGCAGAGGCTTAGTATAGCCTTAGACGTCGCGAACGGGCTTCAGTATATGCACGAGCATACACGCCCGTGCATCGTGCACAAAGACATACGCACGAAGAACGTGCTTTTGAACTCAAAATTCAAGGCCAAAATATCGAATTTTTCACTTTCGAGCTTTGCATCGATTTCCAACTCTCCGACTATCGATGTTTTTGGATTCGGAACCATACTTTTGGAGCTGCTTTCGGGTAGGCGGGTTATGGAAACTTCCGAAGAGGGTAAAGTAAGCATGTTGTGGAAGGAGATAAGAAGTGTGATGCAAAAAGATGAAGATATTGAAAAGAAGTTGACGGAGTGGATGGATCCAAGGATAGCGGGTACATACCCGATTGCTAGTGCTTCATGTGTAGCTTCCATGGCCAGAGCTTGTACGTTAGAAGATGCAGAATCGAGACCTAAGATCTCGGAGATTGTGTTTAGTTTGTCTGTTCTGGCACATTCTTCTTCATCAAGATGTGGGTTTGAAGAGTTTAATTCTTCAAGTGCGGAGAATATTCAGATTATTTGTCCCCCTTTAGCTCGTTGA

Protein

Gene

>AfisC2G00073
CAAAAACCAAAATGTCACCATAATTACACTAGTCAAACATATACCTTCTCTTAACAACTTCACCATAACTACTCTTCTCAAAACGAATACCACCATTTCAAACTCAAATTCAATGAGCCAAATCTCCATTCTAATAGCTTCATTCATAATTTTCACAGCCCTTCATGCTACTTCTTCACAATCAACCAATACTAACACAACCGAATTCACATGTACGCGGCACACGACATGCAAGACTTTCGTGATCTACCGAACTCAATCGCCAGACTACCTCGACCTAGGTCGAATCTCCGACCTCTTCTCCATTAGCCGCCTCTCCATAATGAAGGCGAACGACTTGCCATCCGAAGACATCATTTTTCGCCCTAACCAACTCATTTACGTACCAGTTACGTGCGCGTGCTCGAACAACCAATCTTTCTACAACACTTCGTACTACATCAAATCCCAAGATAGCTTCTACTCCGTCTCCATCACCGCGTACCAAAACCTCACGAACTTTGAGTCCGTCGAAGCCTTGAACCCTGAGCTCGAGCCCACTAAGCTCAAAATCGGGCAGGAGGTCGTGTTCCCGATCTTCTGCAAATGCCCTTCGAAGCAGGACCTTGATCGAGGCTTTAATTTCCTCGTCACATACGTTTGGCAGTCAAATGACGACTTGGTAACGGTGAGTAAAAGAACGGGCACTTCGATCGAAGATTTGATGTCGGTTAACAATTATAGGAACTTCAGCGTGGCTGTCGCGTTGCCGATAGTTGTTCCGATGACAAGAAAACCTCTGATCGACTCGAGCGTGTTCGAAAATGGTGTCGGTAGTAGTCAAGGGATCGATGGTCGAGGTAATTATCATAAGAACAATCATGTTTTGGTCGTGCTTGTTTGGTTGTTAGGATCGATCCTTGCATCAATCGTAGTGTACTTGTCATTTACGACATTTCTCAAAGGATGCTCTAGCAAGCTTATGATACGTATGAATTCGAACTTGGAGACCAAAAACTTGCTTCGATCGAGCAACACTTTCTCGACCGACCCAAGTCTAAGCCCAAAAATCTTCCCACCGGACAAGCTTTTGACCGGAGTAACCGAGTATATCGATAGACAAATCGTGTTTGAAACTAACACCATTTTATCGAACATCGTGAGTAGGTTAAGCGACTCGATGTATCAAGCAACCATAAACAAGGAAGCGTTCGCCGTTAAACAAAGCAAAGGCGACATTACAAGCGAGGTCAATGTTTTACGTATGGTCAACCATGCGAATTTGGTCAAGCTCGTTGGTGTTTCTGAAGAGCACGAAAACAGTTGCTTTCTTGTGTACGAGTTCGTGGAAAACGGATCGCTCGATAAATGGTTATATCAAAGTACGGCCAGTTCGCAATTCCTTTCTTGGAAGCAGAGGCTTAGTATAGCCTTAGACGTCGCGAACGGGCTTCAGTATATGCACGAGCATACACGCCCGTGCATCGTGCACAAAGACATACGCACGAAGAACGTGCTTTTGAACTCAAAATTCAAGGCCAAAATATCGAATTTTTCACTTTCGAGCTTTGCATCGATTTCCAACTCTCCGACTATCGATGTTTTTGGATTCGGAACCATACTTTTGGAGCTGCTTTCGGGTAGGCGGGTTATGGAAACTTCCGAAGAGGGTAAAGTAAGCATGTTGTGGAAGGAGATAAGAAGTGTGATGCAAAAAGATGAAGATATTGAAAAGAAGTTGACGGAGTGGATGGATCCAAGGATAGCGGGTACATACCCGATTGCTAGTGCTTCATGTGTAGCTTCCATGGCCAGAGCTTGTACGTTAGAAGATGCAGAATCGAGACCTAAGATCTCGGAGATTGTGTTTAGTTTGTCTGTTCTGGCACATTCTTCTTCATCAAGATGTGGGTTTGAAGAGTTTAATTCTTCAAGTGCGGAGAATATTCAGATTATTTGTCCCCCTTTAGCTCGTTGACTTTCTGTAATTTGTGAATATAGTTGTGAAGTTTGCTTCGAATGTTCATTGTATAGCTTGTGATAATTGTGTTTTAAGTTTGTTATTTTTATGTTTAGGAGAGTTAACGATTAATTAATGAAGGTGATCTTTCATTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242942.1	2.5e-154	serine/threonine receptor-like kinase NFP
Swissprot	Q0GXS4.1	1.4e-112	Nod-factor receptor 5
trEMBL	A0A834ZK43	2.3e-141	Serine/threonine receptor-like kinase NFP

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G21630.1	28.23	4e-53	206	AtCERK1;AtLYK1;CERK1;LYK1;LYSM RLK1	chitin elicitor receptor kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00073	AT3G21630.1	549	313	17	89	590	85	599	28.23	4e-53	206
AfisC2G00073	AT2G23770.1	608	357	20	19	582	30	598	27.63	3e-47	187
AfisC2G00073	AT2G33580.1	276	140	6	344	588	376	647	36.59	1e-44	178

Ortholog group

Species	Genes
Allium cepa	g498601.t1
Allium fistulosum	AfisC2G00073
Allium sativum	Asa5G00141.1
Arabidopsis thaliana
Oryza sativa	LOC_Os03g13080.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	363	578	85.8	2.6e-24

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0002237	P	response to molecule of bacterial origin
GO:0004674	F	protein serine/threonine kinase activity
GO:0005775	C	vacuolar lumen
GO:0006468	P	protein phosphorylation
GO:0006486	P	protein glycosylation
GO:0007166	P	cell surface receptor signaling pathway
GO:0009877	P	nodulation
GO:0010243	P	response to organonitrogen compound
GO:0045087	P	innate immune response
GO:0048731	P	system development
GO:0097367	F	carbohydrate derivative binding
GO:1900150	P	regulation of defense response to fungus
GO:1901700	P	response to oxygen-containing compound
GO:1902290	P	positive regulation of defense response to oomycetes

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network