result

Gene information

Detail information of AfisC2G00130

Location

Gene	Chr	Start	End	Strand
AfisC2G00130	chr2	14062516	14065359	+

Sequences

CDS

>AfisC2G00130
ATGAAAACCAAAATCAAACCTTTGTTCTCTTTCCTCCTCCTCCTCCACATCACCGTCGGAAAATCCCAAACCCTAATCATCAACGCCACCTCAAAACCAATCCTCAGTGAGAAACAAACCTTCGCCCTCGGATTCTTCAACCTCAACTCGAACTCATCCCACTACTTGGGCATCTGGTACGCCTCCATCCCCATCCGTACCTACGTCTGGGTCGCCAACCGCCGATCCCCAATTCCAACCCCTGGAAAACTATCCCTAACCCCTTCCGGCCATCTTTCCATCATATCCGACCCCAATACCACAATCTGGACTTCCGAAAACACCCTTCCTGCAACCACCTTCAAACTCCTCGACACCGGAAACCTAATCCTTCTCAGCTCTGAAAACGTCGTCGTATGGCAGAGCTTCGACTTCCCGACCGACACGTGGCTTCCTAACATGACGGTGACGAATTCGATGAAGTTGGTCTCCTGGAAATCCCCAACCGATCCGTCGCCCGGAAACTACATCTTTAGGCTCCGACCACCGGAGTACGGCGAGTTCGAGCTCGTCTTCAACGACTCCGTCAAGTACTGGTCCACAGGGAACTGGATAGGGAACAGGTTCACCAATGTGCCGGAAATGACGATCCCGTACATCTACGATTTCCAGTTTCTGAATCCCTTCACCCCTGACGCCAGTTTCATATACTCCCAGAACACAAACGACAACATGAACGGGAAAATGCTGACCAGGTTCGTTCTAGACTCTTCTGGTCAGGTGATGCAGTACACATGGTCAGAGCAGTCCTCCAGTTGGAACATGTTTTGGTCAAGGCCTGAAAGCCCGTGTAAGGTTTACGGGCGGTGCGGGAAGTTAGGGTTCTGCTCAACCGGGCTCAGCCCGTGTGAATGCATTGGTGGGACCCACCCCATGGACTATGACAGCTGGAATTCCGGCGACTTTTCTTGTGGGTGTGAGCATGGGTTCGGTGGCGATGATGTTTTTATCGATGTCGGAAAGTTTGATTTTGATGGAGTTGTGATGAAGTCGGTTCTTGATATTGATTTTGACGGTTGCAAGGGCGTTTGTCGGGGTACTAGTTCTTGTTTCGGTATCAGATATGAGTTTCAAAATCAACACTGCGTCGCCCTTTACGGAGACGCAATGAATTTGAGAAATAGCACCACTTCACCAGTTCTCTATCTCCGTGTTACAAAACCGTCTAGCAAGAAAAAACCACTTGGAAAGTCAAGTATCATGTTAATCGCAATTGGGGTTTCGTTGATTTGTACGATTCTAACCGCTTCAACCGTGATCATAGTTCGAAGAAGCCGAAGAAGCAAAGAACTCAAAAGTAACATTCGAAAACGCGACGAGGAAGACGGTATGAACCTCCGCGTGTTCACGTACAAAGAACTCTCCTCGGCAACCAATAACTTCGTGGAAAAACTCGGGCACGGAGGGTTCGGCGCGGTGTTCCTCGGCAAACTACTAGACTCCACCACCATCGCAGTTAAACGGCTCGAGCGGCCGAACGGCGGCGACCGCGAGTTCCGCGCCGAGATCAAAACCATCGGCAACGTCCACCATGTGAACCTCGTCCGCCTCCGTGGGTTTTGCTCCGAGGACCCGCACCGAATGTTGGTCTACGAGTACGTCCAAAATGGGCCTTTGAGTGCTTACTTGATCCATGATCGGACCGTGTTGAGCTGGAGGGTGAGGATGGAGATAGCGGTGGGAGTGGCGAAGGCGGTGGCTTATTTACATGAAGAGTGCAGGGAGTGTATCATACACTGTGATATAAAGCCGGAGAATATACTATTGGGGGAAGGGTTTGGGCCTAAGTTATCGGATTTTGGGCTGGCGAAGCTGGTGGGCCGGGAGTTCAGCCGAGTGCAGGCGAGTGTGAGAGGGACGTGGGGGTACGTGGCGCCCGAATGGGTTTCGGGAGCTGCCATTACTGCGAAAGCAGATGTGTACAGCTATGGGATGACGTTAATGGAGATTTTGAGGGGGAGGAGGAACGTGAGGAGCATGGAGGAGACGTGGTTCTGGCCGCCATTGGCGGCGAGGAAGGTGGTGGAGGGGGACGTGGCGGCAGTGGTGGATCCGGAGCTGGGGTCGGAGTGGGTGTTTGCGGAGGCAGAGAGGGCGGCGCAGGTGGCTGTTTGGTGCGTTCAGGACGAGGAAGGGATGAGGCCGAGCATGGGGACGGTGGTGAAGATGCTGGAGGGCACCGTGGCGGTGATGGTGCCGCCGATGCCGATGCTGTTGGAGCAGATGGTGGAGGGAGATTCGTTTGGACGAGTGGGGTCGAACAGCTGA

Protein

Gene

>AfisC2G00130
ATTTATGCTGAAAGGCAACCAAAAAAAATAAGTCCCACATCGCCAACCATCCTCCACTCCCCTTATCGTCTCCATTCACACTCTCTTCCACTTTTCACCCAAGCACAAACTCAAACATGCCCCCCATACATACAAACCCACAAACATAAACCCAAACAAATAAATTAAAAATGAAAACCAAAATCAAACCTTTGTTCTCTTTCCTCCTCCTCCTCCACATCACCGTCGGAAAATCCCAAACCCTAATCATCAACGCCACCTCAAAACCAATCCTCAGTGAGAAACAAACCTTCGCCCTCGGATTCTTCAACCTCAACTCGAACTCATCCCACTACTTGGGCATCTGGTACGCCTCCATCCCCATCCGTACCTACGTCTGGGTCGCCAACCGCCGATCCCCAATTCCAACCCCTGGAAAACTATCCCTAACCCCTTCCGGCCATCTTTCCATCATATCCGACCCCAATACCACAATCTGGACTTCCGAAAACACCCTTCCTGCAACCACCTTCAAACTCCTCGACACCGGAAACCTAATCCTTCTCAGCTCTGAAAACGTCGTCGTATGGCAGAGCTTCGACTTCCCGACCGACACGTGGCTTCCTAACATGACGGTGACGAATTCGATGAAGTTGGTCTCCTGGAAATCCCCAACCGATCCGTCGCCCGGAAACTACATCTTTAGGCTCCGACCACCGGAGTACGGCGAGTTCGAGCTCGTCTTCAACGACTCCGTCAAGTACTGGTCCACAGGGAACTGGATAGGGAACAGGTTCACCAATGTGCCGGAAATGACGATCCCGTACATCTACGATTTCCAGTTTCTGAATCCCTTCACCCCTGACGCCAGTTTCATATACTCCCAGAACACAAACGACAACATGAACGGGAAAATGCTGACCAGGTTCGTTCTAGACTCTTCTGGTCAGGTGATGCAGTACACATGGTCAGAGCAGTCCTCCAGTTGGAACATGTTTTGGTCAAGGCCTGAAAGCCCGTGTAAGGTTTACGGGCGGTGCGGGAAGTTAGGGTTCTGCTCAACCGGGCTCAGCCCGTGTGAATGCATTGGTGGGACCCACCCCATGGACTATGACAGCTGGAATTCCGGCGACTTTTCTTGTGGGTGTGAGCATGGGTTCGGTGGCGATGATGTTTTTATCGATGTCGGAAAGTTTGATTTTGATGGAGTTGTGATGAAGTCGGTTCTTGATATTGATTTTGACGGTTGCAAGGGCGTTTGTCGGGGTACTAGTTCTTGTTTCGGTATCAGATATGAGTTTCAAAATCAACACTGCGTCGCCCTTTACGGAGACGCAATGAATTTGAGAAATAGCACCACTTCACCAGTTCTCTATCTCCGTGTTACAAAACCGTCTAGCAAGAAAAAACCACTTGGAAAGTCAAGTATCATGTTAATCGCAATTGGGGTTTCGTTGATTTGTACGATTCTAACCGCTTCAACCGTGATCATAGTTCGAAGAAGCCGAAGAAGCAAAGAACTCAAAAGTAACATTCGAAAACGCGACGAGGAAGACGGTATGAACCTCCGCGTGTTCACGTACAAAGAACTCTCCTCGGCAACCAATAACTTCGTGGAAAAACTCGGGCACGGAGGGTTCGGCGCGGTGTTCCTCGGCAAACTACTAGACTCCACCACCATCGCAGTTAAACGGCTCGAGCGGCCGAACGGCGGCGACCGCGAGTTCCGCGCCGAGATCAAAACCATCGGCAACGTCCACCATGTGAACCTCGTCCGCCTCCGTGGGTTTTGCTCCGAGGACCCGCACCGAATGTTGGTCTACGAGTACGTCCAAAATGGGCCTTTGAGTGCTTACTTGATCCATGATCGGACCGTGTTGAGCTGGAGGGTGAGGATGGAGATAGCGGTGGGAGTGGCGAAGGCGGTGGCTTATTTACATGAAGAGTGCAGGGAGTGTATCATACACTGTGATATAAAGCCGGAGAATATACTATTGGGGGAAGGGTTTGGGCCTAAGTTATCGGATTTTGGGCTGGCGAAGCTGGTGGGCCGGGAGTTCAGCCGAGTGCAGGCGAGTGTGAGAGGGACGTGGGGGTACGTGGCGCCCGAATGGGTTTCGGGAGCTGCCATTACTGCGAAAGCAGATGTGTACAGCTATGGGATGACGTTAATGGAGATTTTGAGGGGGAGGAGGAACGTGAGGAGCATGGAGGAGACGTGGTTCTGGCCGCCATTGGCGGCGAGGAAGGTGGTGGAGGGGGACGTGGCGGCAGTGGTGGATCCGGAGCTGGGGTCGGAGTGGGTGTTTGCGGAGGCAGAGAGGGCGGCGCAGGTGGCTGTTTGGTGCGTTCAGGACGAGGAAGGGATGAGGCCGAGCATGGGGACGGTGGTGAAGATGCTGGAGGGCACCGTGGCGGTGATGGTGCCGCCGATGCCGATGCTGTTGGAGCAGATGGTGGAGGGAGATTCGTTTGGACGAGTGGGGTCGAACAGCTGAGTAATGGGTTTGGATGCGGGTCGGGTTTGAAATGGGACCCGGGTCCGATGTTTGGGTGACGTGGGAAAGGACGGGAAGGGGGGGTTAGGGAGTAGGGGCACGTGATGAGAATCGTTGGATGCGATATTTTTGATGTGAATGTGATAAATAACCAGAAAGAGACGCATGTTTTCGTACCTAATGGTAGTGTTTTTGCGTCTTTAATTATTTTGTTGTATTATTGGGTTGGAAGGGTGAATAAAGAGCATCTTTTTAATTCTACGTTAGTTTTGTCTTTTTAGTTCTTTTTTTGCTCCCGTATATAGGTTGTATTTGTTGACTAAGGTTGAACCATTTTTTGTTATGTGGAAGCTACTTTAAAGAGAAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020698526.1	2.1e-235	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2
Swissprot	Q39203.1	2.3e-202	S-domain-2 (SD2) receptor kinase 2
trEMBL	A0A2I0VTF8	1.5e-235	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00340.1	50.13	0.0	723	RLK4	receptor-like protein kinase 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00130	AT4G00340.1	774	353	12	23	768	22	790	50.13	0.0	723
AfisC2G00130	AT2G19130.1	798	416	21	8	759	7	788	40.10	3e-155	546
AfisC2G00130	AT1G65800.1	795	439	27	22	749	33	811	34.34	2e-108	390

Ortholog group

Species	Genes
Allium cepa	g191233.t1
Allium fistulosum	AfisC2G00130
Allium sativum	Asa5G00212.1
Arabidopsis thaliana	AT4G00340.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	66	160	80.5	7.2e-23
PF00954.17	S_locus_glycop	Domain	192	304	82.8	2.1e-23
PF00069.22	Pkinase	Domain	475	734	155.0	2.1e-45

Gene Ontology

Accession	Ontology	Name
GO:0016020	C	membrane
GO:0004672	F	protein kinase activity
GO:0005488	F	binding
GO:0007154	P	cell communication
GO:0016310	P	phosphorylation
GO:0044464	C	cell part
GO:0050896	P	response to stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network