result

Gene information

Detail information of AfisC2G00378

Location

Gene	Chr	Start	End	Strand
AfisC2G00378	chr2	49208184	49209450	+

Sequences

CDS

Protein

Gene

>AfisC2G00378
CTCAACTATAAATACTCAATAACTCCAAGTTTTTCAGCTAGAATCCTCAACTAGTAGTCCATTCACATAATAAACTTGTATGCTATAATAGTCCCAAAATGGGTCGAGGGCGTGCACCATGCTGTGCTAAAGTGGGCTTAAACAAAGGTTCATGGACACCTGAAGAAGATATGAGGCTCATTACTTATATTCACAAGTATGGCCATGGCAATTGGCGTGCTTTACCTAAACTTGCAGGTATGTATATTAAGAAATTTGATCATATAGTTTCCATAAATATAATACTTGATCTTAAAACTAAGATTATTGTGAGTATTTACAGGTTTGTTGAGATGTGGAAAGAGTTGTAGATTAAGATGGATTAATTATCTAAGACCGGATATTAAGCGAGGAAATTTTAGCAAAGAGGAAGAGGATACCATTATCAAGCTTCATGGATTGCTTGGGAATAAGTAAGATTCATTTTTGAACACACTTTTCTTTATTCTTTCCATAGTTACTTTAAGTTGGCAAATTTTACTAACATGAGTAATTTTTTTTGAATATTCATAAGTACAATAGTAATCAACAAAATCTTGCAAATATTCTACAGATGGTCAAAAATAGCATCATGTTTACCAGGAAGAACTGACAATGAAATTAAAAATGTGTGGAATACACATATAAAGAAGAAACTATCTCCCAAAAATCAAGAAAAACAATCAAAATCAAACGATCAACCGAGCTCTCCATCATCGATCATCACTACCACATCTCCTTCATCCTTAGATGAAGAACAAAATAATAACAATGAAGTTGAGAAAATTGAAATACCAATTGAACAAAACATGGACATATGGGACATTTTAGAAGAAGACTCTGCTACTAACTCGCACTCATCTAATTGTTCGATTGATTTGCCTGATATTCAAATCGAACCCGAGGTATGGGACATGATCAATGATACAAAAAGTAGCAACATTGATAATTCGTGTGAAGATTCGAGTGAGAAATGGATGGAGTATTTGGAGAAAGAGTTGGATTTGTTTGGAGAAATTAAGTTTGATGTTGGTGTGAATGAAGATCCAGTTGCAAGTTATTTTCAAGTTCTTCCATTGTCTTCTTCTTCATCTTTAGACTTATAAGTATGTTGACTATATAGATGTGTAGGTTATGTCTACATCGGAAAGAATGCTTGTCAAAAGTTATGCATGGCAAGAATGTATACTTCTTCTACATGTACATCAAAATCAGTTGAGACTAATATGCATGTACTTATATTAGTATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244981.1	6.5e-83	myb-related protein Zm1-like
Swissprot	P20024.1	2.5e-63	Myb-related protein Zm1
trEMBL	A0A5P1FPH9	4.7e-83	Myb-related protein Zm1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G16490.1	48.25	2e-57	219	ATMYB58;MYB58	myb domain protein 58

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00378	AT1G16490.1	257	94	7	1	234	1	241	48.25	2e-57	219
AfisC2G00378	AT1G79180.1	271	110	5	1	234	1	266	43.91	4e-56	214
AfisC2G00378	AT1G56160.1	120	28	0	1	120	1	120	76.67	3e-55	211

Ortholog group

Species	Genes
Allium cepa	g209142.t1
Allium fistulosum	AfisC2G00378
Allium sativum	Asa5G00603.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g46780.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	16	63	60.4	1.3e-16
PF00249.28	Myb_DNA-binding	Domain	69	113	53.0	2.6e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network